Report for Sequence Feature Glyma08g42750
Feature Type: gene_model
Chromosome: Gm08
Start: 42730640
stop: 42733235
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g42750
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G32930 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:13489595-13490704 FORWARD LENGTH=249
SoyBase E_val: 4.00E-107 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009941 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1KY73 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KY73_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g42750
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g42750
Paralog Evidence Comments
Glyma18g11170 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g42750 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g315600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g42750
Coding sequences of Glyma08g42750
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g42750.1 sequence type=CDS gene model=Glyma08g42750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTCTTTCTGTATCCCTTATGCAACTCAGTTGCGTCTCTCTTCTTCACAATAATCCCTCATCATCATCATCACCGGTGACCCTTTTGCCCAAATCCCTCTTTCCTTGTGGAATTTCCCTGAAACTGAAAGGGTTGGTTTTTTGGAGTAAAAGTAGTTCAGTGTGTGGAAGAAGAAGAGTGGGAGTTGGGAGTATCAGTGTGAATGCCTCTTTGGTTGAGGCTCCAGTTTTGTGGGCTGGAAGGCTATGCATCTTCTATGCCCTCCTCAAGGCTGGCTTGGCTGGATCTCAAGCCAACCCACTTGTCTCAGATTTGGAAATTGGGGATACTAATGATGAATCTGCTCCTGCTGCTGCTACTGACTTGGGATTCTCCAAATGGGCCCAGACCATACTAGGAAAACCAGCAAAAGAAGCTGCTAACGGAAGGAAACTTGTTAGTAAATGGCATCCCACAACAAAGGGTACACTTAGAAGAAACTATAGAGTCCCATCCAAGCTCGAGGGGCGACGTCTTCTTAAAGCTATTGCATCTCTATTATCAGATGATGATCACTTTGTTGATGCCACCTCTCACAAGGGTTGCCAAATCCGTAGGGAAAGTGCTCATGGAGAAAGTGTGTGTTGCAACAATGTGAGAGCTCTTTTTGATGAGCTCCCAACACCCCATATCATTGTGGAAATCACACCTTTTCCTGCTGGACCCCTTAATGACAATGATTACATTAAAGCTGAGAAGCTTGAGAAGGTTCTCAGGTCTAGTCCTTCTGTTTGA
Predicted protein sequences of Glyma08g42750
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g42750.1 sequence type=predicted peptide gene model=Glyma08g42750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MALSVSLMQLSCVSLLHNNPSSSSSPVTLLPKSLFPCGISLKLKGLVFWSKSSSVCGRRRVGVGSISVNASLVEAPVLWAGRLCIFYALLKAGLAGSQANPLVSDLEIGDTNDESAPAAATDLGFSKWAQTILGKPAKEAANGRKLVSKWHPTTKGTLRRNYRVPSKLEGRRLLKAIASLLSDDDHFVDATSHKGCQIRRESAHGESVCCNNVRALFDELPTPHIIVEITPFPAGPLNDNDYIKAEKLEKVLRSSPSV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
