Report for Sequence Feature Glyma08g42740
Feature Type: gene_model
Chromosome: Gm08
Start: 42725495
stop: 42730183
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g42740
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G28840 AT
Annotation by Michelle Graham. TAIR10: XB3 ortholog 1 in Arabidopsis thaliana | chr2:12378542-12380474 FORWARD LENGTH=456
SoyBase E_val: 5.00E-103 ISS
GO:0051049 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transport
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG4412
KOG
26S proteasome regulatory complex, subunit PSMD10
JGI ISS
PTHR24158 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24158:SF306 Panther
JGI ISS
PF00023 PFAM
Ankyrin repeat
JGI ISS
UniRef100_G8Z253 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Hop-interacting protein THI015 n=1 Tax=Solanum lycopersicum RepID=G8Z253_SOLLC
SoyBase E_val: 4.00E-107 ISS
UniRef100_UPI0002338AFD UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002338AFD related cluster n=1 Tax=unknown RepID=UPI0002338AFD
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g42740
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma08g42740 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g315500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g42740
Transcripts of Glyma08g42740
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g42740.2 sequence type=transcript gene model=Glyma08g42740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGGAGGAAGATCCCAATGTTTTGAAACTTACCACTGATGATGATCAAAAACTCTCACCATTGCATGTAGCTGCTGCCACTGGTCAGGTCAAGGTTCTTTCCATGTTGTTGGACAGGAATATGAACGTTGACATAGTGAATCACAATAATCAGACCCCGTTGATGTATGCTGCAAAGCAGGGAAAGATTGATTGTGTTAAAAAGCTTATCCAGGCTGGAGCAAATGTATTCATGATTGATTCTGTACATGGAGGAGGTTGCTTGCACGATGCAGCTTCTCATGGCCACGTAGATTGCCTTAAAGCCATTCTTTTTGCTGCTCATTTCACAGCTTTTGAAGATTCTCGGGGATATTTAAGATTTGTCGACTCGAGAGATTTTAACGGTTTTGCCCCACTGCATCTTGCAGCCCTCAAAGGACAATCTGAATGTGTTGATGCCCTTTTAGACAATGATGCTATTCTTTGTGCTAGAACTAGTAACTGTGGAGGCACAGCACTTCATTTGGCTGCCCGCAGTGGTTCCTTGGACTGTATCCGGATTTTGCTTGCTCGGGGAGCTGATAGACTTCAATTTGATTATCATGGGAATACACCATACACAATTGCCCTGGAGCACGGGCACGAGGAATGTGCTGCCCTGCTAGGTTCTACGTCGGGATCATCACTTGTTTGGCCAAACCATTTAAGGTTCATCAGAGAGCTTGATAAGAAAACAAAGGCCTTACTGGAAAAGGCCTTGGTAGAACTTAACAAGGAGAGGCAGAAAGCCAAAAATAAGCCACGATCATCACGGAATTTGGAGAGAAATAACAATAATATTGCCTCTATGGCCGGCAAAAAGGAGTTATGTTCCATTTGCTATGACCGAGTGTGCACATTTGTGGTCAGACCCTGTGGCCATGAAATGTGTGCTCATTGTATCATGAGGCTATGCCAAAAGAAAAGTGATATTGATGCACCTCGCTCTTCTAATTCTAAACCAGTTTGTCCATTTTGCCGTGGTGACATTGTTCGGTTACTTGCTAAGACTAAGTAACAAGAGCAGTGAATCAAGGGAGGAGTGAGGAACCTTGAAGACTAATTAACTACTGTATTTTTTCATGAAGGCATCAAGGTTTCTTAATAGGTGGAGATTTAGAATGATACACATGCTATGTATTTCTGCAGAGAGATTATTAGGTCGTATATTGAAATAAAATTTAAATGTTATATAAGCATTGATTGTGACTATTAACAGAGAACCTAACAGTATTTTCTTTTGTCACATCAATTTATATTTTCAACACATCAAATTATACTTTTAAAATTAAAGTTTGATATC
>Glyma08g42740.3 sequence type=transcript gene model=Glyma08g42740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GGATGTTAAGGCCATGGTGGAGGAAGATCCCAATGTTTTGAAACTTACCACTGATGATGATCAAAAACTCTCACCATTGCATGTAGCTGCTGCCACTGGTCAGGTCAAGGAATATGAACGTTGACATAGTGAATCACAATAATCAGACCCCGTTGATGTATGCTGCAAAGCAGGGAAAGATTGATTGTGTTAAAAAGCTTATCCAGGCTGGAGCAAATGTATTCATGATTGATTCTGTACATGGAGGAGGTTGCTTGCACGATGCAGCTTCTCATGGCCACGTAGATTGCCTTAAAGCCATTCTTTTTGCTGCTCATTTCACAGCTTTTGAAGATTCTCGGGGATATTTAAGATTTGTCGACTCGAGAGATTTTAACGGTTTTGCCCCACTGCATCTTGCAGCCCTCAAAGGACAATCTGAATGTGTTGATGCCCTTTTAGACAATGATGCTATTCTTTGTGCTAGAACTAGTAACTGTGGAGGCACAGCACTTCATTTGGCTGCCCGCAGTGGTTCCTTGGACTGTATCCGGATTTTGCTTGCTCGGGGAGCTGATAGACTTCAATTTGATTATCATGGGAATACACCATACACAATTGCCCTGGAGCACGGGCACGAGGAATGTGCTGCCCTGCTAGGTTCTACGTCGGGATCATCACTTGTTTGGCCAAACCATTTAAGGTTCATCAGAGAGCTTGATAAGAAAACAAAGGCCTTACTGGAAAAGGCCTTGGTAGAACTTAACAAGGAGAGGCAGAAAGCCAAAAATAAGCCACGATCATCACGGAATTTGGAGAGAAATAACAATAATATTGCCTCTATGGCCGGCAAAAAGGAGTTATGTTCCATTTGCTATGACCGAGTGTGCACATTTGTGGTCAGACCCTGTGGCCATGAAATGTGTGCTCATTGTATCATGAGGCTATGCCAAAAGAAAAGTGATATTGATGCACCTCGCTCTTCTAATTCTAAACCAGTTTGTCCATTTTGCCGTGGTGACATTGTTCGGTTACTTGCTAAGACTAAGTAACAAGAGCAGTGAATCAAGGGAGGAGTGAGGAACCTTGAAGACTAATTAACTACTGTATTTTTTCATGAAGGCATCAAGGTTTCTTAATAGGTGGAGATTTAGAATGATACACATGCTATGTATTTCTGCAGAGAGATTATTAGGTCGTATATTGAAATAAAATTTAAATGTTATATAAGCATTGATTGTGACTATTAACAGAGAACCTAACAGTATTTTCTTTTGTCACATCAATTTATATTTTCAACACATCAAATTATACTTTTAAAATTAAAGTTTGATATC
Coding sequences of Glyma08g42740
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g42740.1 sequence type=CDS gene model=Glyma08g42740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGTTTTTTTTTCCCCTAAAAATTAATTGTCAGGTTCTTTCCATGTTGTTGGACAGGAATATGAACGTTGACATAGTGAATCACAATAATCAGACCCCGTTGATGTATGCTGCAAAGCAGGGAAAGATTGATTGTGTTAAAAAGCTTATCCAGGCTGGAGCAAATGTATTCATGATTGATTCTGTACATGGAGGAGGTTGCTTGCACGATGCAGCTTCTCATGGCCACGTAGATTGCCTTAAAGCCATTCTTTTTGCTGCTCATTTCACAGCTTTTGAAGATTCTCGGGGATATTTAAGATTTGTCGACTCGAGAGATTTTAACGGTTTTGCCCCACTGCATCTTGCAGCCCTCAAAGGACAATCTGAATGTGTTGATGCCCTTTTAGACAATGATGCTATTCTTTGTGCTAGAACTAGTAACTGTGGAGGCACAGCACTTCATTTGGCTGCCCGCAGTGGTTCCTTGGACTGTATCCGGATTTTGCTTGCTCGGGGAGCTGATAGACTTCAATTTGATTATCATGGGAATACACCATACACAATTGCCCTGGAGCACGGGCACGAGGAATGTGCTGCCCTGCTAGGTTCTACGTCGGGATCATCACTTGTTTGGCCAAACCATTTAAGGTTCATCAGAGAGCTTGATAAGAAAACAAAGGCCTTACTGGAAAAGGCCTTGGTAGAACTTAACAAGGAGAGGCAGAAAGCCAAAAATAAGCCACGATCATCACGGAATTTGGAGAGAAATAACAATAATATTGCCTCTATGGCCGGCAAAAAGGAGTTATGTTCCATTTGCTATGACCGAGTGTGCACATTTGTGGTCAGACCCTGTGGCCATGAAATGTGTGCTCATTGTATCATGAGGCTATGCCAAAAGAAAAGTGATATTGATGCACCTCGCTCTTCTAATTCTAAACCAGTTTGTCCATTTTGCCGTGGTGACATTGTTCGGTTACTTGCTAAGACTAAGTAA
>Glyma08g42740.2 sequence type=CDS gene model=Glyma08g42740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGGAGGAAGATCCCAATGTTTTGAAACTTACCACTGATGATGATCAAAAACTCTCACCATTGCATGTAGCTGCTGCCACTGGTCAGGTCAAGGTTCTTTCCATGTTGTTGGACAGGAATATGAACGTTGACATAGTGAATCACAATAATCAGACCCCGTTGATGTATGCTGCAAAGCAGGGAAAGATTGATTGTGTTAAAAAGCTTATCCAGGCTGGAGCAAATGTATTCATGATTGATTCTGTACATGGAGGAGGTTGCTTGCACGATGCAGCTTCTCATGGCCACGTAGATTGCCTTAAAGCCATTCTTTTTGCTGCTCATTTCACAGCTTTTGAAGATTCTCGGGGATATTTAAGATTTGTCGACTCGAGAGATTTTAACGGTTTTGCCCCACTGCATCTTGCAGCCCTCAAAGGACAATCTGAATGTGTTGATGCCCTTTTAGACAATGATGCTATTCTTTGTGCTAGAACTAGTAACTGTGGAGGCACAGCACTTCATTTGGCTGCCCGCAGTGGTTCCTTGGACTGTATCCGGATTTTGCTTGCTCGGGGAGCTGATAGACTTCAATTTGATTATCATGGGAATACACCATACACAATTGCCCTGGAGCACGGGCACGAGGAATGTGCTGCCCTGCTAGGTTCTACGTCGGGATCATCACTTGTTTGGCCAAACCATTTAAGGTTCATCAGAGAGCTTGATAAGAAAACAAAGGCCTTACTGGAAAAGGCCTTGGTAGAACTTAACAAGGAGAGGCAGAAAGCCAAAAATAAGCCACGATCATCACGGAATTTGGAGAGAAATAACAATAATATTGCCTCTATGGCCGGCAAAAAGGAGTTATGTTCCATTTGCTATGACCGAGTGTGCACATTTGTGGTCAGACCCTGTGGCCATGAAATGTGTGCTCATTGTATCATGAGGCTATGCCAAAAGAAAAGTGATATTGATGCACCTCGCTCTTCTAATTCTAAACCAGTTTGTCCATTTTGCCGTGGTGACATTGTTCGGTTACTTGCTAAGACTAAGTAA
>Glyma08g42740.3 sequence type=CDS gene model=Glyma08g42740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACGTTGACATAGTGAATCACAATAATCAGACCCCGTTGATGTATGCTGCAAAGCAGGGAAAGATTGATTGTGTTAAAAAGCTTATCCAGGCTGGAGCAAATGTATTCATGATTGATTCTGTACATGGAGGAGGTTGCTTGCACGATGCAGCTTCTCATGGCCACGTAGATTGCCTTAAAGCCATTCTTTTTGCTGCTCATTTCACAGCTTTTGAAGATTCTCGGGGATATTTAAGATTTGTCGACTCGAGAGATTTTAACGGTTTTGCCCCACTGCATCTTGCAGCCCTCAAAGGACAATCTGAATGTGTTGATGCCCTTTTAGACAATGATGCTATTCTTTGTGCTAGAACTAGTAACTGTGGAGGCACAGCACTTCATTTGGCTGCCCGCAGTGGTTCCTTGGACTGTATCCGGATTTTGCTTGCTCGGGGAGCTGATAGACTTCAATTTGATTATCATGGGAATACACCATACACAATTGCCCTGGAGCACGGGCACGAGGAATGTGCTGCCCTGCTAGGTTCTACGTCGGGATCATCACTTGTTTGGCCAAACCATTTAAGGTTCATCAGAGAGCTTGATAAGAAAACAAAGGCCTTACTGGAAAAGGCCTTGGTAGAACTTAACAAGGAGAGGCAGAAAGCCAAAAATAAGCCACGATCATCACGGAATTTGGAGAGAAATAACAATAATATTGCCTCTATGGCCGGCAAAAAGGAGTTATGTTCCATTTGCTATGACCGAGTGTGCACATTTGTGGTCAGACCCTGTGGCCATGAAATGTGTGCTCATTGTATCATGAGGCTATGCCAAAAGAAAAGTGATATTGATGCACCTCGCTCTTCTAATTCTAAACCAGTTTGTCCATTTTGCCGTGGTGACATTGTTCGGTTACTTGCTAAGACTAAGTAA
Predicted protein sequences of Glyma08g42740
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g42740.1 sequence type=predicted peptide gene model=Glyma08g42740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVFFFPLKINCQVLSMLLDRNMNVDIVNHNNQTPLMYAAKQGKIDCVKKLIQAGANVFMIDSVHGGGCLHDAASHGHVDCLKAILFAAHFTAFEDSRGYLRFVDSRDFNGFAPLHLAALKGQSECVDALLDNDAILCARTSNCGGTALHLAARSGSLDCIRILLARGADRLQFDYHGNTPYTIALEHGHEECAALLGSTSGSSLVWPNHLRFIRELDKKTKALLEKALVELNKERQKAKNKPRSSRNLERNNNNIASMAGKKELCSICYDRVCTFVVRPCGHEMCAHCIMRLCQKKSDIDAPRSSNSKPVCPFCRGDIVRLLAKTK*
>Glyma08g42740.2 sequence type=predicted peptide gene model=Glyma08g42740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVEEDPNVLKLTTDDDQKLSPLHVAAATGQVKVLSMLLDRNMNVDIVNHNNQTPLMYAAKQGKIDCVKKLIQAGANVFMIDSVHGGGCLHDAASHGHVDCLKAILFAAHFTAFEDSRGYLRFVDSRDFNGFAPLHLAALKGQSECVDALLDNDAILCARTSNCGGTALHLAARSGSLDCIRILLARGADRLQFDYHGNTPYTIALEHGHEECAALLGSTSGSSLVWPNHLRFIRELDKKTKALLEKALVELNKERQKAKNKPRSSRNLERNNNNIASMAGKKELCSICYDRVCTFVVRPCGHEMCAHCIMRLCQKKSDIDAPRSSNSKPVCPFCRGDIVRLLAKTK*
>Glyma08g42740.3 sequence type=predicted peptide gene model=Glyma08g42740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNVDIVNHNNQTPLMYAAKQGKIDCVKKLIQAGANVFMIDSVHGGGCLHDAASHGHVDCLKAILFAAHFTAFEDSRGYLRFVDSRDFNGFAPLHLAALKGQSECVDALLDNDAILCARTSNCGGTALHLAARSGSLDCIRILLARGADRLQFDYHGNTPYTIALEHGHEECAALLGSTSGSSLVWPNHLRFIRELDKKTKALLEKALVELNKERQKAKNKPRSSRNLERNNNNIASMAGKKELCSICYDRVCTFVVRPCGHEMCAHCIMRLCQKKSDIDAPRSSNSKPVCPFCRGDIVRLLAKTK*