Report for Sequence Feature Glyma08g42730
Feature Type: gene_model
Chromosome: Gm08
Start: 42711062
stop: 42724425
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g42730
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G36210 AT
Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr5:14248202-14253272 REVERSE LENGTH=730
SoyBase E_val: 0 ISS
GO:0006499 GO-bp
Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation
SoyBase N/A ISS
GO:0006508 GO-bp
Annotation by Michelle Graham. GO Biological Process: proteolysis
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0008236 GO-mf
Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity
SoyBase N/A ISS
KOG2100
KOG
Dipeptidyl aminopeptidase
JGI ISS
PTHR11731 Panther
PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED
JGI ISS
PTHR11731:SF54 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00326 PFAM
Prolyl oligopeptidase family
JGI ISS
UniRef100_G7IXL5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Acyl-peptide hydrolase-like protein n=1 Tax=Medicago truncatula RepID=G7IXL5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KY71 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KY71_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g42730
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g42730
Paralog Evidence Comments
Glyma18g11480 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g42730 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g315400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g42730
Coding sequences of Glyma08g42730
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g42730.1 sequence type=CDS gene model=Glyma08g42730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTCTTCAGCAGCCACCACCATCCCTTCACTTTCTGAGAGAATCACCGCACCATATGGCTCCTGGAAGTCCCCCATCACCACTGACGTCGTCTCCGGTGCCTCCAAGAGGCTTGGCGGCACCGCCGTCGACGGCCGCGGCCGCCTTATTTGGCTGGAATCACGGCCAGCAGAATCGGGACGGGGGGTTCTTGTTGTTGAGCCGGAAAATCCAGGAGGTGAGGCTGTGGACATTACTCCTAAGGAGTTTGGAGTTAGAACAGTGGCTCAGGAGTATGGAGGTGGTGCTTTCACAGTTTCAGGCGATGTTGTTTTCTTTGCAAATTACAAAGATCAGAGATTGTACAAGCAATCCATCAGTTCTCTTGATGTGCCTCCCATACCTCTCACTCCAGACTATGGTGGCCCAGTAGTCAGCTATGCTGATGGAATATTGGACGTACGCTTTAACCGTTTTATTAGTGTAAGGGAAGATCGTTGCGAGAGCAGTCAAAATCCAACTACAACTATTGTATCTATAGCACTTGGCAGTAAGGATGCTCAGGAACCACAAGTACTAGTTGGCGGGAGTGATTTCTATGCTTTCCCGCGTCTTGATCCAAAAAGTGAAAGAATGGCTTGGATTCAGTGGAGTCATCCCAACATGCCGTGGGATAAATCAGAACTATGGGTTGGCTATATTTCTGAAAACGGAGAGATCTACAAGCGGGTATGTGTTGCCGGGAATAATCCTTCACTTGTGGAGTCTCCAACTGAGCCCAAGTGGTCTTCTGATGGAGAGCTGTTTTTCATCACGGATAGGGAAAATGGTTTCTGGAATCTCCATAAATGGATTGAGTCTGAGAATAAGGTCTTGCCTGTTTATTCTTTGGAAGCTGAGTTTGCAAGGCCACTGTGGATTTTTGGTATGAATTCTTATGAATTTCTTCAAAGTCATACACGGAAAAACTTAATTGCTTGCAGTTACAGGCAGCAGGGGAAGTCATATCTTGGAATTATTGATGATGTGAAGGGCTCAAAATTAACTGTGCTGGATATCCCTTTCACAGATATAGATAACATTACTTCTAGTAATAATTACCTTTTTGTGGAGGGAGCATCTGCCGTTCATCCATCATCAGTGGCCAAGGTGACTTTAGATAATGATAAATCAAAAGCAGTTGACTTCAACATTATTTGGTCCTCCTCTCCTGATAGTTTGAAGTATAGTTCTTACTTCAGTAAACCTGAGTTGATTGAATTCCCAACTGAAGTTCCTGGTCAAAATGCTTATGCATACTTTTATCCACCAACTAATCCTGATTTCCAAGCTAGTGAAGAAGAAAAGCCTCCATTATTATTGAAGAGCCACGGTGGACCAACTGCTGAAACACGTGGAATTTTAAACTTGAGCATTCAGTACTGGACTAGTCGGGGTTGGGCATTCGTTGATGTTAATTATGGTGGAAGCACAGGTTATGGCAGGGAGTTCCGAGAACGGCTTTTGGGACGATGGGGAATAGTTGATGTCAATGACTGTTGTAGTTGTGCAACATATTTGGTGAACAGCGGAAAGGTAGATGGGGAGCGACTTTGTATTACAGGTGGCTCTGCTGGTGGGTATACCACCTTAGCTGCTCTTGCTTTTAAAGAAACTTTTAAGGCTGGGGCTTCTTTGTATGGTGTAGCTGACGTTAACATGCTGAGAGCTGAAACTCATAAATTTGAATCTCATTACATTGATAGACTAGGTGGAGGTGAGAAGGGGTGCTATGAAAGATCACCAATCAATCATGTTGACAAATTTTCTTGTCCCATTATTTTATTTCAAGGATTGGATGACAAGGTTGTGCCCCCAGAACAAGCTCGGAAAATTTACCAGGCTCTGAAGGAAAAGGGTGTGCCAGTTGCTCTTGTTGAGTACGAAGGAGAACAACATGGTTTCCGGAAGGCTGAGAACATTAAGTTTACTCTTGAGCAACAAATGGTCTTCTTTGCACGATTGGTTGGACACTTCAATGTTGCTGATGATATTAATCCCATCAAAATTGACAACTTTGATTGA
Predicted protein sequences of Glyma08g42730
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g42730.1 sequence type=predicted peptide gene model=Glyma08g42730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASSAATTIPSLSERITAPYGSWKSPITTDVVSGASKRLGGTAVDGRGRLIWLESRPAESGRGVLVVEPENPGGEAVDITPKEFGVRTVAQEYGGGAFTVSGDVVFFANYKDQRLYKQSISSLDVPPIPLTPDYGGPVVSYADGILDVRFNRFISVREDRCESSQNPTTTIVSIALGSKDAQEPQVLVGGSDFYAFPRLDPKSERMAWIQWSHPNMPWDKSELWVGYISENGEIYKRVCVAGNNPSLVESPTEPKWSSDGELFFITDRENGFWNLHKWIESENKVLPVYSLEAEFARPLWIFGMNSYEFLQSHTRKNLIACSYRQQGKSYLGIIDDVKGSKLTVLDIPFTDIDNITSSNNYLFVEGASAVHPSSVAKVTLDNDKSKAVDFNIIWSSSPDSLKYSSYFSKPELIEFPTEVPGQNAYAYFYPPTNPDFQASEEEKPPLLLKSHGGPTAETRGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATYLVNSGKVDGERLCITGGSAGGYTTLAALAFKETFKAGASLYGVADVNMLRAETHKFESHYIDRLGGGEKGCYERSPINHVDKFSCPIILFQGLDDKVVPPEQARKIYQALKEKGVPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARLVGHFNVADDINPIKIDNFD*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
