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Report for Sequence Feature Glyma08g42691

Feature Type:gene_model
Chromosome:Gm08
Start:42669527
stop:42671237
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G38640AT Annotation by Michelle Graham. TAIR10: Plasma-membrane choline transporter family protein | chr4:18059884-18062091 REVERSE LENGTH=556 SoyBaseE_val: 8.00E-15ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
UniRef100_I1LPR3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LPR3_SOYBN SoyBaseE_val: 3.00E-23ISS
UniRef100_Q93YN6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Plasma-membrane choline transporter family protein n=1 Tax=Arabidopsis thaliana RepID=Q93YN6_ARATH SoyBaseE_val: 4.00E-12ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g42691 not represented in the dataset

Glyma08g42691 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g315000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g42691.2   sequence type=transcript   gene model=Glyma08g42691   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGCTCTCTTCACTATTTGATTGATCTTCTCTATTTCTCTATAATTTTTCTGCATGTTAGGTGCTTTAATTTGTTATTCTCTTAATCTTTCAGCCCCAAGTTAGCTATCTCATCGTCCTCTTTTCACTCAGGAATAAGACAAACGAATTTCAAATCAGTCAGACAAATTGAAAGTAGAAGCTATATATTCACTTTAGGTACTCTTTTCTAATTGCTCCATTCTCTAATTCATGAATTTGAGCTTGGTATTCTTATTTTAATTTTTAATATAATGATTAAGCTTTTCCTTGTATGATTGATTGATTCCTCAAAGCTGAAGTTGGCTAACGCCTGAGGTATGTATATATGCCTGTAATAATCTTCAATAGACAAATTTTAAATTGTTTGAGGTGCAAAATACATTGACAACATAATTTTTTGGCCGTATGTCAAGTGAAAAGAGTGTTAATATGAGAGGGCAAGAGAGGCAAATTTGGACCATATAAACATACATTATTGTGTGCATCTTGGTGTTCTTGTTTTTGGTGATTGGGATCATTGTGTGGATCTTGGTGGTGAATTGGCATCGCGTGGAGCTCACGTTGAGCATAATCGGGGTCGCTTCCCACGCACTTTCAAGGAACATGGCTTTGTTCAGGGTGCTACCTTGTTTGTCTGATGGGCTGGTGTTGTATTTTGTTCCAATCGTGGTTTTCATGGTGTTTGCGAGGTTTAATGGGAAGATTGTTGTGAAGAATTTGAAGAGTGGATACGATTGTGAATGGAAGAAGGATTCTTTGGGTGCCAACTTATTATGCTTTGGTTGTTCTCACCATGTTGTGGTTTGTGCCAGCTATGGTTGAAGATCAAGTTTATGTCAGTGGGACTATTGCTAATTGGTAATTCTTCAAGGAACATCAAACTCTTAGAGTGATAGAGTGATACTTTTAATGTGAATTAAAAAATATGTGAAA

>Glyma08g42691.1   sequence type=CDS   gene model=Glyma08g42691   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTGTTCAGGGTGCTACCTTGTTTGTCTGATGGGCTGGTGTTGTATTTTGTTCCAATCGTGGTTTTCATGGTGTTTGCGAGGTTTAATGGGAAGATTGTTGTGAAGAATTTGAAGAGTGGATACGATTGTGAATGGAAGAAGGATTCTTTGGGTGCCAACTTATTATGCTTTGGTTGTTCTCACCATGTTGTGGTTTGTGCCAGCTATGGTTGA

>Glyma08g42691.2   sequence type=CDS   gene model=Glyma08g42691   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTGTTCAGGGTGCTACCTTGTTTGTCTGATGGGCTGGTGTTGTATTTTGTTCCAATCGTGGTTTTCATGGTGTTTGCGAGGTTTAATGGGAAGATTGTTGTGAAGAATTTGAAGAGTGGATACGATTGTGAATGGAAGAAGGATTCTTTGGGTGCCAACTTATTATGCTTTGGTTGTTCTCACCATGTTGTGGTTTGTGCCAGCTATGGTTGA

>Glyma08g42691.1   sequence type=predicted peptide   gene model=Glyma08g42691   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALFRVLPCLSDGLVLYFVPIVVFMVFARFNGKIVVKNLKSGYDCEWKKDSLGANLLCFGCSHHVVVCASYG*

>Glyma08g42691.2   sequence type=predicted peptide   gene model=Glyma08g42691   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALFRVLPCLSDGLVLYFVPIVVFMVFARFNGKIVVKNLKSGYDCEWKKDSLGANLLCFGCSHHVVVCASYG*







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