Glyma08g42660 - SoyBase

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Report for Sequence Feature Glyma08g42660

Feature Type:	gene_model
Chromosome:	Gm08
Start:	42637743
stop:	42639008
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g42660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G27030	AT	Annotation by Michelle Graham. TAIR10: fatty acid desaturase A \| chr4:13571951-13572922 FORWARD LENGTH=323	SoyBase	E_val: 2.00E-131	ISS
GO:0006636	GO-bp	Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0046471	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol metabolic process	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity	SoyBase	N/A	ISS
GO:0052637	GO-mf	Annotation by Michelle Graham. GO Molecular Function: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	SoyBase	N/A	ISS
KOG3011	KOG	Ubiquitin-conjugating enzyme	JGI		ISS
PTHR24067	Panther	UBIQUITIN-CONJUGATING ENZYME E2	JGI		ISS
PTHR24067:SF57	Panther	UBIQUITIN-CONJUGATING ENZYME E2 S	JGI		ISS
PF10520	PFAM	Kua-ubiquitin conjugating enzyme hybrid localisation domain	JGI		ISS
UniRef100_G7IXK5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein n=1 Tax=Medicago truncatula RepID=G7IXK5_MEDTR	SoyBase	E_val: 1.00E-165	ISS
UniRef100_I1N0R4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N0R4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g42660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g42660

Paralog	Evidence	Comments
Glyma18g11620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g42660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g314700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g42660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g42660

Limit To All Plant Sequences

>Glyma08g42660.2   sequence type=CDS   gene model=Glyma08g42660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATTCCTTAGCTCAACACAAGTATACACCAAACTTCCACCACCAAGTTTGCAAGAACCATCCACCCCGTCACCCGTCTCGAGTACATTGTTCTACCACAACCACTACCACCACCACCTCTAGGTCTAAGTCCAATGCTAAGTCATTGGTCATTGAGACCCGGCTCGTGCCGGTGCCGCCAATGCCAACGGTCGTTACCACTGAGATCCACCGTCCAATGAACAATGACCCAAGTTTGCAATCAACATGGTCTCATAGAGCTTGGGTGGCAGCTGGATGCTCAACTTTGGTCATTTCCTTGGGAGAGTCCATAAAGGGTGCTATTGATTTGAACATGTGGGTTGAGCCCATTGTGGCAGGTTGGGTTGGATACATCTTAGCTGATCTTGGATCAGGGGTTTACCATTGGGCCATCGACAATTATGGCGATGGCTCAACCCCAATAGTTGGGGCTCAAATTGAAGCCTTTCAAGGCCACCACAAGTGGCCTTGGACCATCACTAGGCGTCAATTTGCTAACAATTTACATGCATTGGCACGTGCAGTGACCTTGGCAGTGCTTCCTGTAGTCCTTCTTTGCCATGACCCTATTGTTGAAGGATTTGTTGTGGTGTGCTCAGGTTGCATCATGTTTAGCCAACAGTTTCATGCATGGTCACATGGCACTAAGAGCCGGCTTCCGCCACTCGTGGTGGCATTACAAGAGGCCGGCGTGCTCGTGTCACGGTGGCAACATGCCGCACACCACCGGGCACCATATAACAATAACTATTGTATAGTGAGTGGAGTGTGGAATGAGTTTTTGGATAAGCATAAGGTCTTTGAAGCCATGGAAATGGTATTGTATTTTAAAACAGGAGTTAGGCCAAGGTCATGGAGTGAACCTGCCCCTGAGTGGGTTGAGGAGATTGAGACTCCTTCTCAAATCCAAATCCAAACCCAATGA

Predicted protein sequences of Glyma08g42660

Limit To All Plant Sequences

>Glyma08g42660.2   sequence type=predicted peptide   gene model=Glyma08g42660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYSLAQHKYTPNFHHQVCKNHPPRHPSRVHCSTTTTTTTTSRSKSNAKSLVIETRLVPVPPMPTVVTTEIHRPMNNDPSLQSTWSHRAWVAAGCSTLVISLGESIKGAIDLNMWVEPIVAGWVGYILADLGSGVYHWAIDNYGDGSTPIVGAQIEAFQGHHKWPWTITRRQFANNLHALARAVTLAVLPVVLLCHDPIVEGFVVVCSGCIMFSQQFHAWSHGTKSRLPPLVVALQEAGVLVSRWQHAAHHRAPYNNNYCIVSGVWNEFLDKHKVFEAMEMVLYFKTGVRPRSWSEPAPEWVEEIETPSQIQIQTQ*

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