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Report for Sequence Feature Glyma08g42570

Feature Type:gene_model
Chromosome:Gm08
Start:42576120
stop:42576759
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g42570
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G50360AT Annotation by Michelle Graham. TAIR10: centrin2 | chr3:18674421-18675502 FORWARD LENGTH=169 SoyBaseE_val: 4.00E-32ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0030048GO-bp Annotation by Michelle Graham. GO Biological Process: actin filament-based movement SoyBaseN/AISS
GO:0051645GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi localization SoyBaseN/AISS
GO:0051646GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondrion localization SoyBaseN/AISS
GO:0060151GO-bp Annotation by Michelle Graham. GO Biological Process: peroxisome localization SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR10891Panther CALMODULIN JGI ISS
PTHR10891:SF41Panther CALMODULIN RELATED JGI ISS
PF00036PFAM EF hand JGI ISS
UniRef100_G7KY76UniRef Annotation by Michelle Graham. Most informative UniRef hit: Caltractin n=1 Tax=Medicago truncatula RepID=G7KY76_MEDTR SoyBaseE_val: 5.00E-37ISS
UniRef100_I1KY52UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KY52_SOYBN SoyBaseE_val: 1.00E-53ISS

Expression Patterns of Glyma08g42570
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g42570 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma08g42570
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g42570
>Glyma08g42570.1   sequence type=CDS   gene model=Glyma08g42570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGAGTTGAATTTGCAACAAATTAATCAAATGATAGCAGATGTGGACAAGGATGGAAGTGGAGCAATTGATTATGAAGAATTTGAGTACATGATGACAGCCAAAATAGGAGAGCGGGACAGTAAAGAGGAGCTCATGAAAGCTTTGCATACTATTGATCATGATAAAAATGGAAAGATATCTGCATCAGACAACAACCGCATTGCAAAAGAGCTAGGTCAAAATTTCACTGACAGAGATTCAGGAGATGATTGA
Predicted protein sequences of Glyma08g42570
>Glyma08g42570.1   sequence type=predicted peptide   gene model=Glyma08g42570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIELNLQQINQMIADVDKDGSGAIDYEEFEYMMTAKIGERDSKEELMKALHTIDHDKNGKISASDNNRIAKELGQNFTDRDSGDD*






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