SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G07040 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27030.1); Has 540 Blast hits to 538 proteins in 187 species: Archae - 0; Bacteria - 333; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink). | chr1:2161225-2163035 REVERSE LENGTH=371 | SoyBase | E_val: 3.00E-33 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| UniRef100_E4MWL6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-15-D07 n=1 Tax=Eutrema halophilum RepID=E4MWL6_THEHA | SoyBase | E_val: 3.00E-30 | ISS |
| UniRef100_I1LN07 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LN07_SOYBN | SoyBase | E_val: 9.00E-50 | ISS |
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Glyma08g42530 not represented in the dataset |
Glyma08g42530 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g42530.1 sequence type=CDS gene model=Glyma08g42530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTTATTATTTTGGTTGTTTGTGCAAGATTTACATACAAAACTACTTCATACCAGGATCCTGTTGTAGAGTGAGCCCTGATTGTCTTCTCCAGCAAAGCTCAACTGTAGAAGATTCAATTTCATTCAAATTTTCTGATGGTATAACTGAATCAGTTCCATGCTCATACACTGAATTTGCCGAGCGACTGGTGCTGCGGCAGTATAAAAATTTACCTGACACAGAGGTTAAAGAGTTCCATAGAAGAGATGGTTTCGAGGTAGCAAGTGCTGACAAGATGGCTAAGTCATGCATG
>Glyma08g42530.1 sequence type=predicted peptide gene model=Glyma08g42530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLYYFGCLCKIYIQNYFIPGSCCRVSPDCLLQQSSTVEDSISFKFSDGITESVPCSYTEFAERLVLRQYKNLPDTEVKEFHRRDGFEVASADKMAKSCM
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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