Glyma08g42400 - SoyBase

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Report for Sequence Feature Glyma08g42400

Feature Type:	gene_model
Chromosome:	Gm08
Start:	42390383
stop:	42398119
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g42400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G58750	AT	Annotation by Michelle Graham. TAIR10: citrate synthase 2 \| chr3:21724564-21727458 REVERSE LENGTH=514	SoyBase	E_val: 0	ISS
GO:0006099	GO-bp	Annotation by Michelle Graham. GO Biological Process: tricarboxylic acid cycle	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0019243	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0044262	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0080129	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0004108	GO-mf	Annotation by Michelle Graham. GO Molecular Function: citrate (SI)-synthase activity	SoyBase	N/A	ISS
GO:0046912	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	SoyBase	N/A	ISS
KOG2617	KOG	Citrate synthase	JGI		ISS
PTHR11739	Panther	CITRATE SYNTHASE	JGI		ISS
PF00285	PFAM	Citrate synthase	JGI		ISS
UniRef100_I1KY39	UniRef	Annotation by Michelle Graham. Best UniRef hit: Citrate synthase n=1 Tax=Glycine max RepID=I1KY39_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KY39	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Citrate synthase n=1 Tax=Glycine max RepID=I1KY39_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g42400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g42400

Paralog	Evidence	Comments
Glyma18g12393	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g42400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g311200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g42400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g42400

Limit To All Plant Sequences

>Glyma08g42400.1   sequence type=CDS   gene model=Glyma08g42400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAAAACAACTACTTCTTCCGAACAAACTGCACGAAACCGTTTGGCCACCCTCGCAGCTCACTTGCTTCCCTCCGACGCCACCTCCGCCGCCGCGATCCTCCACCCCCACCGGCTCTCCGCCCCCACCGGAGACTTGCCGCCGGCGAACCTGAAGGGCACCCTTACCGTCGTCGACGAGAGGACCGGCAAGAAGTACCAGATCGAAGTCACCCCAGATGGCACCGTCAGAGCCTCTGACTTCAAGAAGATATCATCTGGGAAAAATGACAAGGGACTCAAACTTTATGATCCTGGCTATTTGAACACTGCTCCTGTCATCTCAAGGATTTCTTACATTGATGGTGATGCTGGAATCCTTAGATATAGAGGATATCCTATTGAAGACTTGGCAGAGAAAAGCACCTTTACAGAAGTGTCATATCTCATACTGTATGGAAATTTGCCTTCTGAAAGTCAGTTAGCGGAATGGGAATTCGCCTTATCTCAGCATTCAGCTGTACCACAAGGAGTTTTGGATATGATAGAATCAATGCCTCATGATGCACATCCTATGGGCATGCTTGTCAATGCCATGAGCGCTTTGTCTGTTTTTCATCCTGATGCAAATCCTGCTCTCAAAGGTCTTGATATCTACAACTCAAAGCAAGTGAGAGACAAGCAAATAGCACGGGTTATTGGAAAGATAACAACAATTGCTGCTGCGATTAATCTTAGATTGGCAGGAAGGCCGCCTGTGCTTCCATCCAACAAACTTTCTTACACAGAGAACTTCCTATACATGCTAGATTCTTTTGGCAATCGATCATATAAACCTAATCCTCGACTAACTCGAGCGCTGGACATTATCTTCGTCCTGCATGCAGAACATGAAATGAATTGCTCTACATCTGCTGTACGTCACCTCTCATCAAGTGGTGTTGATGTATATACTGCTATTGCTGGGGCTGTTGGAGCTCTATATGGACCTCTTCATGGTGGAGCCAATGAGGCTGTCCTCAAAATGTTGAGTGAAATTGGAACTGTTGAGAACATTCCAGCATTCATTGAGGGTGTTAAAGCCAGGAAACGGAAGCTCAGTGGTTTTGGACATCGTGTGTACAAAAATTATGATCCAAGAGCAAAGGTCTTGAGGAAACTGACAGAGGAAGTGTTTTCCATTGTTGGCCGGGATCCTCTTATAGAGATTGCTGTTGCCTTGGAGAAGATTGCACTGTCTGATGAGTATTTCATCAAGAGGAAGCTATATCCAAATGTTGACTTCTACTCTGGACTGATTTATAGGGCCATGGGGTTTCAACCTGAGTTTTTCACTGTTTTATTTGCCATCCCTCGAATGGCCGGGTACTTGGCACATTGGCGAGAGTCCTTGGATGATCCTGATACAAAGATTATGAGACCTCAACAGGTTTATGTTGGGGAGTGGTTGAGGCATTATGCACCAATTAATCAAAGGACTGCATCAAGTAACACTGACAAACTTGGTCAATTGGCTGTATCAAACGCCTCAAAGAGGCGTCTTGCTGGATCTGGGGCTTAA

Predicted protein sequences of Glyma08g42400

Limit To All Plant Sequences

>Glyma08g42400.1   sequence type=predicted peptide   gene model=Glyma08g42400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKTTTSSEQTARNRLATLAAHLLPSDATSAAAILHPHRLSAPTGDLPPANLKGTLTVVDERTGKKYQIEVTPDGTVRASDFKKISSGKNDKGLKLYDPGYLNTAPVISRISYIDGDAGILRYRGYPIEDLAEKSTFTEVSYLILYGNLPSESQLAEWEFALSQHSAVPQGVLDMIESMPHDAHPMGMLVNAMSALSVFHPDANPALKGLDIYNSKQVRDKQIARVIGKITTIAAAINLRLAGRPPVLPSNKLSYTENFLYMLDSFGNRSYKPNPRLTRALDIIFVLHAEHEMNCSTSAVRHLSSSGVDVYTAIAGAVGALYGPLHGGANEAVLKMLSEIGTVENIPAFIEGVKARKRKLSGFGHRVYKNYDPRAKVLRKLTEEVFSIVGRDPLIEIAVALEKIALSDEYFIKRKLYPNVDFYSGLIYRAMGFQPEFFTVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYVGEWLRHYAPINQRTASSNTDKLGQLAVSNASKRRLAGSGA*

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