Glyma08g42390 - SoyBase

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Report for Sequence Feature Glyma08g42390

Feature Type:	gene_model
Chromosome:	Gm08
Start:	42383962
stop:	42389129
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g42390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G04865	AT	Annotation by Michelle Graham. TAIR10: Aminotransferase-like, plant mobile domain family protein \| chr2:1712149-1714599 FORWARD LENGTH=667	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR11668	Panther	SERINE/THREONINE PROTEIN PHOSPHATASE	JGI		ISS
PTHR11668:SF94	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF10536	PFAM	Plant mobile domain	JGI		ISS
UniRef100_F4IFD0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aminotransferase-like, plant mobile domain family protein n=1 Tax=Arabidopsis thaliana RepID=F4IFD0_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338AF6	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338AF6 related cluster n=1 Tax=unknown RepID=UPI0002338AF6	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g42390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g42390

Paralog	Evidence	Comments
Glyma18g12416	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g42390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g311100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g42390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g42390

Limit To All Plant Sequences

>Glyma08g42390.4   sequence type=transcript   gene model=Glyma08g42390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCAAACCCAAAGGAATCCCCCATTGAGAATTCCACACACACCCTTTGTACGTGTGTAATGTTTGCCCTCAAACAATTACAAACCTGTGCTAAGTGCTAAATCAAGCGACGACGACGGTGGAAGTCGTATCGTGTTCTCCTCCATTCACTATTCGGCGCTCTGGCAATTTTCCCTCAAAATGTTTTTCATACAAGGAAAGAGAATTTTGTAACTCAATGCAGCAAGAATAGATGGCAGTCAAAGTTGAGGCTTATCCATTACTCGGTTTAGATAACAGGAAAGATCAATCCCTAAAATCTGCAATATAAATCCTTCATTTCCTGTCGTCATAGTAATGGAAGCGGCAGCAGTGGACCCTTATACAACTAATCCAGGTCCAATTGATGGTTCAGTACTGTATGACCAAGACAAGCATGTCTCTGCAGCAGTTTGGGATGGACAGGAGCGTGGTGCCCTCAGATGTCATGAACATACTTCAAAGCTTGATCAGTGGACACTTACTCATAAACAGGTTGAGTTGGTAGATAAGGCTGGATTTGGATACTTAAGGTCAATCCCAGCTATTAGTCTAGACAATCCTCTTATCTCAGCTCTAGTTGAAAGGTGGAGAAGAGAAACAAACACATTTCACTTGAATGTTGGTGAAATGACAGTAACTCTTAAAGATGTTGCACTCTTGCTTGGGCTGGCAATTGATGGAGAACCTGTAATTGGTATTACCTATACCGCATGCAGTTCAGTGTGTGAAAAGTATCTTGGTAGATCACCAGAGTCTGGTTACACAAGTGGCGGAATGGTGAAGCTAAGTTGGTTGAAAGAGTTCTTTTCTCGCTGTCCTGAAGATGCTCCATTGGAAGTGATTGAGCAACATACTCGTGCATATCTTCTTTATCTTGTAGGTAGCACCATATTCTCCACAACTACAGGGAACAAAGTCCCTGTAATGTATCTGCCATTATTTGAGAATTTTGATAGATGTGGGCAATATGCCTGGGGTGCTGCAGCATTGTCATTCTTGTATCGTGCACTCGGCAATGCCTCACTAAAAACTCAAAGTACCATTAGTGGCTGTTTAACACTACTTCAGTGTTGGAGTTACTTTCACCTAAATATTGGACGACCAAAGCTCAATCTTGAGCTGATGCATGATCGATTTCCCTTTGTGCTTAGATGGAAAGGAAAACAAAGTGGCCCAACTGCAAATCGTGATGTAGTTTTCTATCGGAAGTCTCTGGATTCCCTAAAACCATGTGATGTGGAGTGGCTCCCATACCGAAACATGGACAGCATGGTAATTCCAGAATATATCAAAAGCACTTTAATTCTTGGGAGGTCAAAGACAATGCTGATATGCTTTGATAAGGCAGAACGACATCTTCCAAATCGATGTTTAAGGCAATATGGCATGCTTCAATCTATTCCAGATGATGTGGAGCGGTGGGAGAGGAAGAGTAGAGGAGTTGATGGTGGCGTTGATTTGTCAGGGAAAATGGAATCCGAGCTTAATGAATGGATGGACCGTCAAGTGAGTATTGTTGATGGAGATGAGGGTGCAGATGAAAGTGAGTACATGGAGTGGTATATGAGAATCACTCGTAAGTTCATCGGAAGGCCTATATCTCTGTCGTCTGAGTTTCAGAGAACGAATGCTGGTCTGAGGGATATTGCACACATAGCGGATACCTTTTCAACAAAAGGGCTAGATCCACAACAAATTGAATCAATATCAAGGATAAGATATATTGCGCATGAATGTCTGAGAGACCAATTTGGTGGTTTGGTCATGGCGTCAGGGAGCCCCCAAGTTGAACTAGGAAAAAGGGTCAGAGGAAAGGAGAGGGTTAGAAGAAAAGGAGGAGCGGGTAAACGACTGCGAAAGGATGGTGTGGTTCAATATAATGCCGTTAGTGAGGATGAACAACCTCAGTACTATGGCACTGCTATTGAGGTTGGCCAATTACATCTAAGTCATATTGAGAGAGAGCTGAGTCATGCACAATTATGTAGTGTTGACAATGAAGTCAGTGTTGCCCAGTTGATTCATGCAAATGCTGATGGTGAGAATATGCAGCTCTGTGATCCACACATTGAGGTTGATGAATCAGATCTAGGCTATGCAGCAGGTGAAGAAAATAATGAGGACCCAGATGATGCGGCTGCTGAATTTAGTCCTGAAGAACTAAAGCACAGAGTTGGTGAAGAAATAAAGCAAGAGCTTAACCATGTGCCTGGAGAGGAAAACATCGAGGAACTGAATGCAGCCAATGAGATTCATTTTGTGGAACCTTCAGATAATATGGTGATTGATAATTCACAACTTTGTGATGTTAGTCCCGACGATTCAACGCTTCCAGATGCTGCTGCTGCTGAGGTCAATCACTCACAACTTGCTGACTCAAGTGGTGTGATCAATCCACAACAAAGCAGTCCAACTGACAATCTTGTTAATTCTCAGCTTTCTCACATTAACCTTGAAAGTGAATTTCTTTCTGCTAAAGGAGCAATGGAAGTGTCTCAACATTCTTCTATTGAAACTCGTGAGGATATTTCACAGAATGGTGATTGTAGTGTTGCTGTATAGGGTGAATACCTTACAATATTGTAGAGAAGCAAAATTTTTTAGGCTGACTCAATTTAAAGGTGTGATCCTTGTATAATTATTTATATTCATTTTTTGATGCATAGCTTGCAGCTTTTTCTATGCTTGTGAATTAAGGTGCATGACATGCAACTTAATCGCTCAGGCATCACCAATACAATACAAGAAATGGGTGATTATGCAGTATCACATTCCCTGGTTCCTCTGGAAATGGGTGTAAATGGGAGTTCAAAGTCGCTAATACTCTTTTTGAGTTTCTATAGTGAAGGGCAGAATAAGAGTTATCAAGGTTGTCTTCCAAAATCTACCAGGTTTAAAAAGTTCATATATGTTTTTAATAATTTAGTGTTATCA

Coding sequences of Glyma08g42390

Limit To All Plant Sequences

>Glyma08g42390.3   sequence type=CDS   gene model=Glyma08g42390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCGGCAGCAGTGGACCCTTATACAACTAATCCAGGTCCAATTGATGGTTCAGTACTGTATGACCAAGACAAGCATGTCTCTGCAGCAGTTTGGGATGGACAGGAGCGTGGTGCCCTCAGATGTCATGAACATACTTCAAAGCTTGATCAGTGGACACTTACTCATAAACAGGTTGAGTTGGTAGATAAGGCTGGATTTGGATACTTAAGGTCAATCCCAGCTATTAGTCTAGACAATCCTCTTATCTCAGCTCTAGTTGAAAGGTGGAGAAGAGAAACAAACACATTTCACTTGAATGTTGGTGAAATGACAGTAACTCTTAAAGATGTTGCACTCTTGCTTGGGCTGGCAATTGATGGAGAACCTGTAATTGGTATTACCTATACCGCATGCAGTTCAGTGTGTGAAAAGTATCTTGGTAGATCACCAGAGTCTGGTTACACAAGTGGCGGAATGGTGAAGCTAAGTTGGTTGAAAGAGTTCTTTTCTCGCTGTCCTGAAGATGCTCCATTGGAAGTGATTGAGCAACATACTCGTGCATATCTTCTTTATCTTGTAGGTAGCACCATATTCTCCACAACTACAGGGAACAAAGTCCCTGTAATGTATCTGCCATTATTTGAGAATTTTGATAGATGTGGGCAATATGCCTGGGGTGCTGCAGCATTGTCATTCTTGTATCGTGCACTCGGCAATGCCTCACTAAAAACTCAAAGTACCATTAGTGGCTGTTTAACACTACTTCAGTGTTGGAGTTACTTTCACCTAAATATTGGACGACCAAAGCTCAATCTTGAGCTGATGCATGATCGATTTCCCTTTGTGCTTAGATGGAAAGGAAAACAAAGTGGCCCAACTGCAAATCGTGATGTAGTTTTCTATCGGAAGTCTCTGGATTCCCTAAAACCATGTGATGTGGAGTGGCTCCCATACCGAAACATGGACAGCATGGTAATTCCAGAATATATCAAAAGCACTTTAATTCTTGGGAGGTCAAAGACAATGCTGATATGCTTTGATAAGGCAGAACGACATCTTCCAAATCGATGTTTAAGGCAATATGGCATGCTTCAATCTATTCCAGATGATGTGGAGCGGTGGGAGAGGAAGAGTAGAGGAGTTGATGGTGGCGTTGATTTGTCAGGGAAAATGGAATCCGAGCTTAATGAATGGATGGACCGTCAAGTGAGTATTGTTGATGGAGATGAGGGTGCAGATGAAAGTGAGTACATGGAGTGGTATATGAGAATCACTCGTAAGTTCATCGGAAGGCCTATATCTCTGTCGTCTGAGTTTCAGAGAACGAACATAAACAAATGTTTGCAGAATGCTGGTCTGAGGGATATTGCACACATAGCGGATACCTTTTCAACAAAAGGGCTAGATCCACAACAAATTGAATCAATATCAAGGATAAGATATATTGCGCATGAATGTCTGAGAGACCAATTTGGTGGTTTGGTCATGGCGTCAGGGAGCCCCCAAGTTGAACTAGGAAAAAGGGTCAGAGGAAAGGAGAGGGTTAGAAGAAAAGGAGGAGCGGGTAAACGACTGCGAAAGGATGGTGTGGTTCAATATAATGCCGTTAGTGAGGATGAACAACCTCAGTACTATGGCACTGCTATTGAGGTTGGCCAATTACATCTAAGTCATATTGAGAGAGAGCTGAGTCATGCACAATTATGTAGTGTTGACAATGAAGTCAGTGTTGCCCAGTTGATTCATGCAAATGCTGATGGTGAGAATATGCAGCTCTGTGATCCACACATTGAGGTTGATGAATCAGATCTAGGCTATGCAGCAGGTGAAGAAAATAATGAGGACCCAGATGATGCGGCTGCTGAATTTAGTCCTGAAGAACTAAAGCACAGAGTTGGTGAAGAAATAAAGCAAGAGCTTAACCATGTGCCTGGAGAGGAAAACATCGAGGAACTGAATGCAGCCAATGAGATTCATTTTGTGGAACCTTCAGATAATATGGTGATTGATAATTCACAACTTTGTGATGTTAGTCCCGACGATTCAACGCTTCCAGATGCTGCTGCTGCTGAGGTCAATCACTCACAACTTGCTGACTCAAGTGGTGTGATCAATCCACAACAAAGCAGTCCAACTGACAATCTTGTTAATTCTCAGCTTTCTCACATTAACCTTGAAAGTGAATTTCTTTCTGCTAAAGGAGCAATGGAAGTGTCTCAACATTCTTCTATTGAAACTCGTGAGGATATTTCACAGAATGGTGATTGTAGTGTTGCTGTATAG

>Glyma08g42390.4   sequence type=CDS   gene model=Glyma08g42390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCGGCAGCAGTGGACCCTTATACAACTAATCCAGGTCCAATTGATGGTTCAGTACTGTATGACCAAGACAAGCATGTCTCTGCAGCAGTTTGGGATGGACAGGAGCGTGGTGCCCTCAGATGTCATGAACATACTTCAAAGCTTGATCAGTGGACACTTACTCATAAACAGGTTGAGTTGGTAGATAAGGCTGGATTTGGATACTTAAGGTCAATCCCAGCTATTAGTCTAGACAATCCTCTTATCTCAGCTCTAGTTGAAAGGTGGAGAAGAGAAACAAACACATTTCACTTGAATGTTGGTGAAATGACAGTAACTCTTAAAGATGTTGCACTCTTGCTTGGGCTGGCAATTGATGGAGAACCTGTAATTGGTATTACCTATACCGCATGCAGTTCAGTGTGTGAAAAGTATCTTGGTAGATCACCAGAGTCTGGTTACACAAGTGGCGGAATGGTGAAGCTAAGTTGGTTGAAAGAGTTCTTTTCTCGCTGTCCTGAAGATGCTCCATTGGAAGTGATTGAGCAACATACTCGTGCATATCTTCTTTATCTTGTAGGTAGCACCATATTCTCCACAACTACAGGGAACAAAGTCCCTGTAATGTATCTGCCATTATTTGAGAATTTTGATAGATGTGGGCAATATGCCTGGGGTGCTGCAGCATTGTCATTCTTGTATCGTGCACTCGGCAATGCCTCACTAAAAACTCAAAGTACCATTAGTGGCTGTTTAACACTACTTCAGTGTTGGAGTTACTTTCACCTAAATATTGGACGACCAAAGCTCAATCTTGAGCTGATGCATGATCGATTTCCCTTTGTGCTTAGATGGAAAGGAAAACAAAGTGGCCCAACTGCAAATCGTGATGTAGTTTTCTATCGGAAGTCTCTGGATTCCCTAAAACCATGTGATGTGGAGTGGCTCCCATACCGAAACATGGACAGCATGGTAATTCCAGAATATATCAAAAGCACTTTAATTCTTGGGAGGTCAAAGACAATGCTGATATGCTTTGATAAGGCAGAACGACATCTTCCAAATCGATGTTTAAGGCAATATGGCATGCTTCAATCTATTCCAGATGATGTGGAGCGGTGGGAGAGGAAGAGTAGAGGAGTTGATGGTGGCGTTGATTTGTCAGGGAAAATGGAATCCGAGCTTAATGAATGGATGGACCGTCAAGTGAGTATTGTTGATGGAGATGAGGGTGCAGATGAAAGTGAGTACATGGAGTGGTATATGAGAATCACTCGTAAGTTCATCGGAAGGCCTATATCTCTGTCGTCTGAGTTTCAGAGAACGAATGCTGGTCTGAGGGATATTGCACACATAGCGGATACCTTTTCAACAAAAGGGCTAGATCCACAACAAATTGAATCAATATCAAGGATAAGATATATTGCGCATGAATGTCTGAGAGACCAATTTGGTGGTTTGGTCATGGCGTCAGGGAGCCCCCAAGTTGAACTAGGAAAAAGGGTCAGAGGAAAGGAGAGGGTTAGAAGAAAAGGAGGAGCGGGTAAACGACTGCGAAAGGATGGTGTGGTTCAATATAATGCCGTTAGTGAGGATGAACAACCTCAGTACTATGGCACTGCTATTGAGGTTGGCCAATTACATCTAAGTCATATTGAGAGAGAGCTGAGTCATGCACAATTATGTAGTGTTGACAATGAAGTCAGTGTTGCCCAGTTGATTCATGCAAATGCTGATGGTGAGAATATGCAGCTCTGTGATCCACACATTGAGGTTGATGAATCAGATCTAGGCTATGCAGCAGGTGAAGAAAATAATGAGGACCCAGATGATGCGGCTGCTGAATTTAGTCCTGAAGAACTAAAGCACAGAGTTGGTGAAGAAATAAAGCAAGAGCTTAACCATGTGCCTGGAGAGGAAAACATCGAGGAACTGAATGCAGCCAATGAGATTCATTTTGTGGAACCTTCAGATAATATGGTGATTGATAATTCACAACTTTGTGATGTTAGTCCCGACGATTCAACGCTTCCAGATGCTGCTGCTGCTGAGGTCAATCACTCACAACTTGCTGACTCAAGTGGTGTGATCAATCCACAACAAAGCAGTCCAACTGACAATCTTGTTAATTCTCAGCTTTCTCACATTAACCTTGAAAGTGAATTTCTTTCTGCTAAAGGAGCAATGGAAGTGTCTCAACATTCTTCTATTGAAACTCGTGAGGATATTTCACAGAATGGTGATTGTAGTGTTGCTGTATAG

Predicted protein sequences of Glyma08g42390

Limit To All Plant Sequences

>Glyma08g42390.3   sequence type=predicted peptide   gene model=Glyma08g42390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAAAVDPYTTNPGPIDGSVLYDQDKHVSAAVWDGQERGALRCHEHTSKLDQWTLTHKQVELVDKAGFGYLRSIPAISLDNPLISALVERWRRETNTFHLNVGEMTVTLKDVALLLGLAIDGEPVIGITYTACSSVCEKYLGRSPESGYTSGGMVKLSWLKEFFSRCPEDAPLEVIEQHTRAYLLYLVGSTIFSTTTGNKVPVMYLPLFENFDRCGQYAWGAAALSFLYRALGNASLKTQSTISGCLTLLQCWSYFHLNIGRPKLNLELMHDRFPFVLRWKGKQSGPTANRDVVFYRKSLDSLKPCDVEWLPYRNMDSMVIPEYIKSTLILGRSKTMLICFDKAERHLPNRCLRQYGMLQSIPDDVERWERKSRGVDGGVDLSGKMESELNEWMDRQVSIVDGDEGADESEYMEWYMRITRKFIGRPISLSSEFQRTNINKCLQNAGLRDIAHIADTFSTKGLDPQQIESISRIRYIAHECLRDQFGGLVMASGSPQVELGKRVRGKERVRRKGGAGKRLRKDGVVQYNAVSEDEQPQYYGTAIEVGQLHLSHIERELSHAQLCSVDNEVSVAQLIHANADGENMQLCDPHIEVDESDLGYAAGEENNEDPDDAAAEFSPEELKHRVGEEIKQELNHVPGEENIEELNAANEIHFVEPSDNMVIDNSQLCDVSPDDSTLPDAAAAEVNHSQLADSSGVINPQQSSPTDNLVNSQLSHINLESEFLSAKGAMEVSQHSSIETREDISQNGDCSVAV*

>Glyma08g42390.4   sequence type=predicted peptide   gene model=Glyma08g42390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAAAVDPYTTNPGPIDGSVLYDQDKHVSAAVWDGQERGALRCHEHTSKLDQWTLTHKQVELVDKAGFGYLRSIPAISLDNPLISALVERWRRETNTFHLNVGEMTVTLKDVALLLGLAIDGEPVIGITYTACSSVCEKYLGRSPESGYTSGGMVKLSWLKEFFSRCPEDAPLEVIEQHTRAYLLYLVGSTIFSTTTGNKVPVMYLPLFENFDRCGQYAWGAAALSFLYRALGNASLKTQSTISGCLTLLQCWSYFHLNIGRPKLNLELMHDRFPFVLRWKGKQSGPTANRDVVFYRKSLDSLKPCDVEWLPYRNMDSMVIPEYIKSTLILGRSKTMLICFDKAERHLPNRCLRQYGMLQSIPDDVERWERKSRGVDGGVDLSGKMESELNEWMDRQVSIVDGDEGADESEYMEWYMRITRKFIGRPISLSSEFQRTNAGLRDIAHIADTFSTKGLDPQQIESISRIRYIAHECLRDQFGGLVMASGSPQVELGKRVRGKERVRRKGGAGKRLRKDGVVQYNAVSEDEQPQYYGTAIEVGQLHLSHIERELSHAQLCSVDNEVSVAQLIHANADGENMQLCDPHIEVDESDLGYAAGEENNEDPDDAAAEFSPEELKHRVGEEIKQELNHVPGEENIEELNAANEIHFVEPSDNMVIDNSQLCDVSPDDSTLPDAAAAEVNHSQLADSSGVINPQQSSPTDNLVNSQLSHINLESEFLSAKGAMEVSQHSSIETREDISQNGDCSVAV*

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