Glyma08g42353 - SoyBase

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Report for Sequence Feature Glyma08g42353

Feature Type:	gene_model
Chromosome:	Gm08
Start:	42340640
stop:	42349960
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g42353

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_UPI000233C0F0	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C0F0 related cluster n=1 Tax=unknown RepID=UPI000233C0F0	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g42353

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g42353 not represented in the dataset	Glyma08g42353 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g42353

Paralog	Evidence	Comments
Glyma18g12491	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g42353 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g310800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g42353

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g42353

Limit To All Plant Sequences

>Glyma08g42353.1   sequence type=CDS   gene model=Glyma08g42353   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTTAGATTCCATGGCTTCTCCATAAGGGACTACACTTCCAAGATGAGGTCCGTCGACGTTTTCAAATGCTGGCCATTCCCCGCAGCCGGACTCAGCCGCAACCAGGTCGAGTCCCGGTTGCCTCCTATGAGTACTCCAAAGTTGCGGCGGTGGTCGGATGAGCTCGCCGAACTGAGATCCGACCTCGCTGGCGCTGGAGGAACCGAAGAAAGGTTGAATCAACGGTACGAGAGCGAATCCGAGAAAGAGGAAGAAGATAAGGTGGAGCTTGTTTGCCCCGTGTGCCAAGATTTCAACGCTTCGACACTGACTGCGGTGAATGCGCATATCGACGGTTGTCTCACGCGAACTGTGAGGGAGGAGCGGCAGTGGATGAGGAGGTCGAAATCGAAGGTGCCGAAGAGGCGCTCCATCGCAGAGATTTTCGAGCTAAAAGAGGACATGGAAGAGGAGAAACCGCTGCTGCCGGAGATCGATACGGAGCTTAAACGTTTGCCGTTTGATGAGGTTTCGATCATGGTGACAAAGTTTCGGTGGCTCTCGGAGCGGCTCGAGACCTTGAGATCCAACGGAATTTCGTTCGATTCGGTGAAATCCGTCGTAGGAAACTCGAATTCCACAGCAGAAGAGGAGGAATCGGAGATGCTTTGTCCTGTTTGTAGGGTTTTCAACTCCGCAACGGTGATGGCGGCGAACACGCACATCAACGGTTGCCAGGCAACCGCGATGAAGAATAATGAGTTGTGGGGGAAACCGAGTTTAAATAATCCAAAGCCGAAAGAGCCGAAGAAGCGTTCTCTCGCCGATATTCTCACCGTCACGCCGCAAATCGACGGCGACGGAAAACTCTTGGTGGAGGCCGAGAAAGACGACGAAGAGATCGGAGAAGAGTTCGAGAAACACGGTTTCTCCGGTGCTAGAATCAAGAGCAAGAAGAGTACGAACAACAACGTGACGAAGAAGAGAAAGTTGAAGAAGGTTATTATGAGGAAGAAAAACAAAGTGGAAAAGTGTGGTGTTGTGACTCTAAACGAGGAAAGTAAGAAGATAAACAAAAAGAGGAAGAAGAAAAAAAAGCTAAACAAGGAGTTCACTGCGAAGAAGGGAGATGCTTACAAGCGCAAGTTGCAGAATTCAGTACATAGTTTCACAAAGCAAGGCACTGTTGGGAATAAAAAGGTTAAACTTGACGACATTGATGCTTCTTCTGCTCTTGAAAAGAAATTGGGTTTAAAGACATTATCAGAAGAAAATAAGGAAAAAGTGAAAAACTGGGACTCAGTTGGAAAGCAACAAAAGGTAGTAGTGTCTCCCATTGGCGGTATTCTTAAGAATCACAAACACATTTATGGAAGTACTTCAATTGGTAGTAATATTCAAGATGGCACTGAGGAAACCCATTGTGATGTTCAAGTGCCACCATCAGACAAGCATGTGAGATTTTCTGCTGAGGATTCTGTGCTTGGTCCAGAAAAGAGAAGCTCATTTGATGAAACCGTGTTCAGTTTATCTTCAGATATGCCGGCTTCTTCATTTGGAGAGGAGAAGCTCACTGGAAATGATGAAGGCACTGTGAACTTGGAGGAAAACAGAAATGGCAACACTGCCATTAACACAGATAAGAGAAAGGAGGTTTGTCCTATGGTTGAAAGTAAACAATTTTCTAATACTCTAGGACTTGTTGCTGTACAAAATTTGTTAAAGCCGTGTACCAGTGAAGAGAAATCAAAGCACTTAGAAGAGAAGTCTGAATCATTATCCAATGTGACGATTTGTGATAATAATAATTTAGACCGGTTTGATGGAGGCAACACAACTACAGTGCATGTTTCTTCATATGGTGACCTTTCTAGATCTCTTTCAGAACTTCAAGGGGGGCAAAGTTCTGGTATAAGTACACAACCGTGTGAATCTGAAGCTTTTAGTTACACTGGGAAGTTCATTGATCATTTGGGAGGTCCAAGTTTTCAGTCTACAAATGCACACACAAGGACATATTTGGAGCCTTCACCCTCTTATTCTGCTTCCTGTAACGAAGTAAATAACAGACCTGAATTTCCATTGCACACATATGGAAACGATGATAATAATGGCCAAGCTTTGGGTGACAGGTCGTTGTCAGGCACGTTTTCTGCTGATATGATTGATAATTCGTTTCTCTTGCCTGGCTGGGGGAGAGGAAGTATAAGGAATAACTGCATGGAGCAGAACTTTTATGGTTTGCCACTCAATTCTCATGGTGACCTAATCAACTTTAGTTCAAGTGGAAAAATTGGGATGAACCAGCCTGAGACATCATGTACATTAAGAAGTTCTTTAAGTGGCTTACCTGTGAACAATGTTATCCATCAAAGTAGCCAGGAATGTTTAAGCATTGGTAAGAGGCATGTTGTTCAGAAGACACTTCAAGATAGCGTAAATCCATTTCCTCACTATTCAGGAAGGTTAGGTGTTAGAGAGTTACATGGAAGGGAGAGAGGAGATATCTACCAGCATAATTCTGGTTGGTGTTCAAATCACTATGTCCAGCCACTTGATTCAGAGTTGAACCTCATGAGAAACCCTTTCATTGAACAGAATCAGAATCAGAATCAACTTGAAAAGGTGCCAAATCACGAGGAATATGGAATGGTTTCACCAAGAGGAAGCTCAGGTCTTGTTTCACCAAGTTGCAGCCAACCAACAATGAGGTTGATGGGTAAAGATGTTCCGATTGGTAGAAGCAGCAAAGAAAAGCAACAATTTGTGGGAGGAGTTCTTTGGGCTGAAGAGGAATCCAGAAGGCATTATTCTGTAGATGCTGCTAGGGACAATTCTTTGTTAGGAAGATGCTACATGCCAGATTCAGCATCTGGTTCTCAATTACAGAGACAAACTGAGAATGTGTTTCAATCAGTGAAAATTCTAAGCAAACAGGCATTACAAAGTACCTTGTTGATGAATGGTCCAAACTCTGAATTTCTTAACCAGCGAAGTAATCATATATCTCAAAATGGAAGCCTTGGAGTCAGCAGAAATGCTAGTACTAATTTGCATACTATTTCCCAAGTAACTACTTCGTGTGCAATATATAATAGGCCACCTGAAGACTTGCCTGAGCAGTTTATATCTCAAGGATTCTGCTTTCATTCTCAGGTATCATCTAATCCTTGCAATTTCAATCAGTCTACTTTAAGCAGTCGTGAGCTGAATGACTGGAAGATGCACCACCGTGTCGCGAATTCAGCCTTTGAATTTCCCTTCTTGCACCCAATTGTTGAAGAACATGCCAAATCATCTTGGTTCAAGAGGTCCTATAGCAGTTTGGCACCATGGCCCTTAAGCTCAACACATGAAAGGCCACCTGGGAGCTCTTCTAGTACAAGTTTTCCTCATAATACTTGGAGAAATGATTCTACAATTTCATCTGTGAACCATTCATCAGATGTTTTGTATCCTCCTACTTCAGTTGCTACTCACTGTCCCAGGAAGACCATTCGTTACCCAACATCAACTGCTCATCCTCATCCTCATTCTCGTTCTCCATACGCTTCAGTTTCCCCCATTATCAAACCACCCTCTGCCATAGATAGTGGTTGTAGAAACTTATTTAAAGTCACTGACAGAGTGAAATTTGATGATATGAGTGCCAGAGTGCATCATCCATGCACCAATTCCAGGAAAAGACCCTCAACTAGTTTTGTTGATCCTGCAAAACCTAACAAGTTACCTAATATAGAAGTGAAGAAAAACTTAACTGGCATGGCTGTGCAGCAAAACACAAGAGAAGTTGAACTTGATCTCCAAGTGGGTGCAATTGGTAAATGTTGTCAGAATGAGGCTCAGAATCTAAATCCAAGAGGCTTTGATTCTTTTAACCTGGATGGTGTGGTAATATCAGGTCCTGTGAAACTTAGCCCAGGTGCTAAGCATATTCTGAAACCCTCTCAAAATCAGGATAACTCAACACCGGTCCATTCTGCCATTCCTATTGCTGTGACTACTGATTGTGGTTGCTGA

Predicted protein sequences of Glyma08g42353

Limit To All Plant Sequences

>Glyma08g42353.1   sequence type=predicted peptide   gene model=Glyma08g42353   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALRFHGFSIRDYTSKMRSVDVFKCWPFPAAGLSRNQVESRLPPMSTPKLRRWSDELAELRSDLAGAGGTEERLNQRYESESEKEEEDKVELVCPVCQDFNASTLTAVNAHIDGCLTRTVREERQWMRRSKSKVPKRRSIAEIFELKEDMEEEKPLLPEIDTELKRLPFDEVSIMVTKFRWLSERLETLRSNGISFDSVKSVVGNSNSTAEEEESEMLCPVCRVFNSATVMAANTHINGCQATAMKNNELWGKPSLNNPKPKEPKKRSLADILTVTPQIDGDGKLLVEAEKDDEEIGEEFEKHGFSGARIKSKKSTNNNVTKKRKLKKVIMRKKNKVEKCGVVTLNEESKKINKKRKKKKKLNKEFTAKKGDAYKRKLQNSVHSFTKQGTVGNKKVKLDDIDASSALEKKLGLKTLSEENKEKVKNWDSVGKQQKVVVSPIGGILKNHKHIYGSTSIGSNIQDGTEETHCDVQVPPSDKHVRFSAEDSVLGPEKRSSFDETVFSLSSDMPASSFGEEKLTGNDEGTVNLEENRNGNTAINTDKRKEVCPMVESKQFSNTLGLVAVQNLLKPCTSEEKSKHLEEKSESLSNVTICDNNNLDRFDGGNTTTVHVSSYGDLSRSLSELQGGQSSGISTQPCESEAFSYTGKFIDHLGGPSFQSTNAHTRTYLEPSPSYSASCNEVNNRPEFPLHTYGNDDNNGQALGDRSLSGTFSADMIDNSFLLPGWGRGSIRNNCMEQNFYGLPLNSHGDLINFSSSGKIGMNQPETSCTLRSSLSGLPVNNVIHQSSQECLSIGKRHVVQKTLQDSVNPFPHYSGRLGVRELHGRERGDIYQHNSGWCSNHYVQPLDSELNLMRNPFIEQNQNQNQLEKVPNHEEYGMVSPRGSSGLVSPSCSQPTMRLMGKDVPIGRSSKEKQQFVGGVLWAEEESRRHYSVDAARDNSLLGRCYMPDSASGSQLQRQTENVFQSVKILSKQALQSTLLMNGPNSEFLNQRSNHISQNGSLGVSRNASTNLHTISQVTTSCAIYNRPPEDLPEQFISQGFCFHSQVSSNPCNFNQSTLSSRELNDWKMHHRVANSAFEFPFLHPIVEEHAKSSWFKRSYSSLAPWPLSSTHERPPGSSSSTSFPHNTWRNDSTISSVNHSSDVLYPPTSVATHCPRKTIRYPTSTAHPHPHSRSPYASVSPIIKPPSAIDSGCRNLFKVTDRVKFDDMSARVHHPCTNSRKRPSTSFVDPAKPNKLPNIEVKKNLTGMAVQQNTREVELDLQVGAIGKCCQNEAQNLNPRGFDSFNLDGVVISGPVKLSPGAKHILKPSQNQDNSTPVHSAIPIAVTTDCGC*

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