Glyma08g42300 - SoyBase

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Report for Sequence Feature Glyma08g42300

Feature Type:	gene_model
Chromosome:	Gm08
Start:	42292614
stop:	42301924
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g42300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G58780	AT	Annotation by Michelle Graham. TAIR10: K-box region and MADS-box transcription factor family protein \| chr3:21739150-21741766 FORWARD LENGTH=248	SoyBase	E_val: 2.00E-116	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009886	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-embryonic morphogenesis	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0010047	GO-bp	Annotation by Michelle Graham. GO Biological Process: fruit dehiscence	SoyBase	N/A	ISS
GO:0048440	GO-bp	Annotation by Michelle Graham. GO Biological Process: carpel development	SoyBase	N/A	ISS
GO:0048441	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal development	SoyBase	N/A	ISS
GO:0048443	GO-bp	Annotation by Michelle Graham. GO Biological Process: stamen development	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0048507	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0014	KOG	MADS box transcription factor	JGI		ISS
PTHR11945	Panther	MADS BOX PROTEIN	JGI		ISS
PTHR11945:SF19	Panther	MADS BOX PROTEIN	JGI		ISS
PF00319	PFAM	SRF-type transcription factor (DNA-binding and dimerisation domain)	JGI		ISS
PF01486	PFAM	K-box region	JGI		ISS
UniRef100_I1KY27	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=4 Tax=Phaseoleae RepID=I1KY27_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q56NI2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MADS box protein M8 n=1 Tax=Pisum sativum RepID=Q56NI2_PEA	SoyBase	E_val: 2.00E-157	ISS

Expression Patterns of Glyma08g42300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g42300

Paralog	Evidence	Comments
Glyma18g12590	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g42300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g310100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g42300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g42300

Limit To All Plant Sequences

>Glyma08g42300.2   sequence type=transcript   gene model=Glyma08g42300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAATTATTATTCACACCTTTTGTTTTGTTTTCTTTCCCTTTCTCTTGAGTTTATTTGGTTTGATGATTTGCTTTTTTTTTTTTGATAAAAAAATTATTGAATAATAGCACTAACTAATTATTTGGTATAAATATTACTTATAGCTTCCAACCATGGAGGATCCAAATCAAGCTCCAGAAGCGTCTTCTCAGAAGAAAATGGGAAGAGGGAAGATTGAAATCAAACGGATCGAGAACACCACCAATAGGCAAGTCACCTTCTGCAAGCGCCGCAACGGTTTGCTGAAAAAAGCTTATGAATTATCAGTTCTGTGTGATGCTGAAGTTGCCCTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAACGCAGAATCCGTATCTGAAGCTAACACACAGTTTTACCAGCAAGAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAACCTCGAGGGTAGATTGGAGAAAGGATTAAGCAGAGTTAGATCTAGAAAGCATGAAACATTGTTTGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCACAACAATTATCTGCGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAACAGCAATCAAATATGAATATGTCAGGAACACTGTGCGAGTCCCTTCCTTCACAATCATACGACAGGAATTTTTTCCCTGTAAATCTCATAGCTTCTGATGATCAACAACAATACTCTCGTCAAGACCACACTGCTCTCCAACTTGTCTGATATGCTGGAAGTTAAAGCTACTGGAAGTTCATGGCTCTAGCTAGCTATTTGAATAGTTACGTGTATTGTCTATATAGTGCTGAGCAAATAATATTGCCATACAGGCATATATATATATATGCCTGCGTTAATTTCCTGAATCAGTTGCGTCTTTAGAATTGACGTTAATTGGCTAGCTAAAGGTCATTATTAAACTGTGAACTAAATGAACCATTTTGGACTCATATTTCATACGATATATATAATGTTAATGTATCTTTTAATAAGAGCTAGCTAGTTTCTAAACCTCACA

>Glyma08g42300.3   sequence type=transcript   gene model=Glyma08g42300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGAGTGGTAATTGTGGAGGGTCTATTTTTCTGTCCATAAATACCTGTCTGCTAGGCCAACCCACTTCCATATTTTGCATCCTTTGTACCTCAGTTCCAGGTTAACACCAAACAACACATATAGTGCAGATTCATAAGCTTCCAACCATGGAGGATCCAAATCAAGCTCCAGAAGCGTCTTCTCAGAAGAAAATGGGAAGAGGGAAGATTGAAATCAAACGGATCGAGAACACCACCAATAGGCAAGTCACCTTCTGCAAGCGCCGCAACGGTTTGCTGAAAAAAGCTTATGAATTATCAGTTCTGTGTGATGCTGAAGTTGCCCTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAACGCAGAATCCGTATCTGAAGCTAACACACAGTTTTACCAGCAAGAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAACCTCGAGGGTAGATTGGAGAAAGGATTAAGCAGAGTTAGATCTAGAAAGCATGAAACATTGTTTGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCACAACAATTATCTGCGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAACAGCAATCAAATATGAATATGTCAGGAACACTGTGCGAGTCCCTTCCTTCACAATCATACGACAGGAATTTTTTCCCTGTAAATCTCATAGCTTCTGATGATCAACAACAATACTCTCGTCAAGACCACACTGCTCTCCAACTTGTCTGATATGCTGGAAGTTAAAGCTACTGGAAGTTCATGGCTCTAGCTAGCTATTTGAATAGTTACGTGTATTGTCTATATAGTGCTGAGCAAATAATATTGCCATACAGGCATATATATATATATGCCTGCGTTAATTTCCTGAATCAGTTGCGTCTTTAGAATTGACGTTAATTGGCTAGCTAAAGGTCATTATTAAACTGTGAACTAAATGAACCATTTTGGACTCATATTTCATACGATATATATAATGTTAATGTATCTTTTAATAAGAGCTAGCTAGTTTCTAAACCTCACACCGTGTATTTGTATTTGTCTGCATGCATTTGTTGTGGCCTACTGCTCTAAAAAGTGATTGTTGAAGGATGAACTTGGTAGTAGT

Coding sequences of Glyma08g42300

Limit To All Plant Sequences

>Glyma08g42300.1   sequence type=CDS   gene model=Glyma08g42300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCCAACCATGGAGGATCCAAATCAAGCTCCAGAAGCGTCTTCTCAGAAGAAAATGGGAAGAGGGAAGATTGAAATCAAACGGATCGAGAACACCACCAATAGGCAAGTCACCTTCTGCAAGCGCCGCAACGGTTTGCTGAAAAAAGCTTATGAATTATCAGTTCTGTGTGATGCTGAAGTTGCCCTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAACGCAGAATCCGTATCTGAAGCTAACACACAGTTTTACCAGCAAGAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAACCTCGAGGGTAGATTGGAGAAAGGATTAAGCAGAGTTAGATCTAGAAAGCATGAAACATTGTTTGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCACAACAATTATCTGCGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAACAGCAATCAAATATGAATATGTCAGGAACACTGTGCGAGTCCCTTCCTTCACAATCATACGACAGGAATTTTTTCCCTGTAAATCTCATAGCTTCTGATGATCAACAACAATACTCTCGTCAAGACCACACTGCTCTCCAACTTGTCTGA

>Glyma08g42300.2   sequence type=CDS   gene model=Glyma08g42300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGATCCAAATCAAGCTCCAGAAGCGTCTTCTCAGAAGAAAATGGGAAGAGGGAAGATTGAAATCAAACGGATCGAGAACACCACCAATAGGCAAGTCACCTTCTGCAAGCGCCGCAACGGTTTGCTGAAAAAAGCTTATGAATTATCAGTTCTGTGTGATGCTGAAGTTGCCCTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAACGCAGAATCCGTATCTGAAGCTAACACACAGTTTTACCAGCAAGAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAACCTCGAGGGTAGATTGGAGAAAGGATTAAGCAGAGTTAGATCTAGAAAGCATGAAACATTGTTTGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCACAACAATTATCTGCGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAACAGCAATCAAATATGAATATGTCAGGAACACTGTGCGAGTCCCTTCCTTCACAATCATACGACAGGAATTTTTTCCCTGTAAATCTCATAGCTTCTGATGATCAACAACAATACTCTCGTCAAGACCACACTGCTCTCCAACTTGTCTGA

>Glyma08g42300.3   sequence type=CDS   gene model=Glyma08g42300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGATCCAAATCAAGCTCCAGAAGCGTCTTCTCAGAAGAAAATGGGAAGAGGGAAGATTGAAATCAAACGGATCGAGAACACCACCAATAGGCAAGTCACCTTCTGCAAGCGCCGCAACGGTTTGCTGAAAAAAGCTTATGAATTATCAGTTCTGTGTGATGCTGAAGTTGCCCTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGTGTTAGGGCCACTATTGAGAGGTACAAGAAGGCAAATGCTGCTGCTTCAAACGCAGAATCCGTATCTGAAGCTAACACACAGTTTTACCAGCAAGAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAACCTCGAGGGTAGATTGGAGAAAGGATTAAGCAGAGTTAGATCTAGAAAGCATGAAACATTGTTTGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCACAACAATTATCTGCGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAACAGCAATCAAATATGAATATGTCAGGAACACTGTGCGAGTCCCTTCCTTCACAATCATACGACAGGAATTTTTTCCCTGTAAATCTCATAGCTTCTGATGATCAACAACAATACTCTCGTCAAGACCACACTGCTCTCCAACTTGTCTGA

Predicted protein sequences of Glyma08g42300

Limit To All Plant Sequences

>Glyma08g42300.1   sequence type=predicted peptide   gene model=Glyma08g42300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLPTMEDPNQAPEASSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKANAAASNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQSNMNMSGTLCESLPSQSYDRNFFPVNLIASDDQQQYSRQDHTALQLV*

>Glyma08g42300.2   sequence type=predicted peptide   gene model=Glyma08g42300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDPNQAPEASSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKANAAASNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQSNMNMSGTLCESLPSQSYDRNFFPVNLIASDDQQQYSRQDHTALQLV*

>Glyma08g42300.3   sequence type=predicted peptide   gene model=Glyma08g42300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDPNQAPEASSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKANAAASNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQSNMNMSGTLCESLPSQSYDRNFFPVNLIASDDQQQYSRQDHTALQLV*

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