Glyma08g42230 - SoyBase

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Report for Sequence Feature Glyma08g42230

Feature Type:	gene_model
Chromosome:	Gm08
Start:	42188239
stop:	42197436
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g42230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G29400	AT	Annotation by Michelle Graham. TAIR10: MEI2-like protein 5 \| chr1:10290393-10293696 REVERSE LENGTH=800	SoyBase	E_val: 0	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0045836	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of meiosis	SoyBase	N/A	ISS
GO:0045927	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of growth	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG4660	KOG	Protein Mei2, essential for commitment to meiosis, and related proteins	JGI		ISS
PTHR24011	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24011:SF200	Panther		JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
PF04059	PFAM	RNA recognition motif 2	JGI		ISS
UniRef100_Q6J739	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AML1 n=2 Tax=Medicago truncatula RepID=Q6J739_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E407	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E407 related cluster n=1 Tax=unknown RepID=UPI000233E407	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g42230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g42230

Paralog	Evidence	Comments
Glyma18g12730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g42230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g309400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g42230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g42230

Limit To All Plant Sequences

>Glyma08g42230.2   sequence type=CDS   gene model=Glyma08g42230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAACATTCTGGGAATTCTTCATCAGCTCATGCTGCTGCAGGTCCATCTGAGATTTCCCCACTTAATATTCCAAAAAAGGCGGGAAGCAGTGCATGGGGAATACCTCGTGCCAGTGATGTGTTCCATGACTCAAGTGATGTTAGCTTGTTTTCTAGTTCACTGCCTGTTCTTCCACATGAAAAGTTAGATTTGACTGATTCTGAAAATTATGGTCAACCAGTCGATGTTAACTTGATAACATTAGATAAAGTTCACAAAGAAGACGAGGGACATGATCCTTTTGATGACTTTGAAACCAATGCAATTGGGAGCATGCTTCCCGATGATGAAGAGGACCTTTTGGCTGGGATTATGGATGATTTTGACCTCAGTAAATTGCCCAGTCAACTGGAGGATTTGGATGAAAATGATCTGTTTGTCAATGGAGGGGGATTTGAGATGGATTTTGAACCCCAAGAGAGCCTCAATATCGGTGTGTCCAAGATAAGCATATCAGATGGAGTTGCTTCAAATGGTATTGGTCAGTATGCAATCCCAAATGGTGTGGGAACAGTGGCTGGGGAGCATCCCTATGGCGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAATAGTAATGTCGAGGACTCTGAATTACGAACACTATTTGAGCTATATGGGGACATTAGAACTTTATACACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGATATTCGAGCTGCTCGCACTGCCATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCTAAGGATAACCCCTCGGAAAAAGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTAGATCCATCAGTATCCAATGATGACCTTCGTCAAATATTTGGGGCTTATGGTGAGGTCAAAGAGATCAGGGAAACACCACACAAGAGACACCATAAATTTATTGAATTTTATGACGTTAGAGCAGCAGAGGCAGCTCTTAAAGCATTAAATCGAAGTGATATTGCTGGGAAACGCATAAAACTTGAACCCAGTCGCCCTGGTGGAGCTCGTAGAAACTTGATGCAACAACTGAGCCAAGAACTGGAACAAGATGAAGCTCGAACTTTTAGACATCAAGTAGATTCACCTGTGGCCAGTTCTCCTCCCGGTAGCTGGGCACAATTTGGTAGTCCAGTTGAACAAAATCCATTATCTTCTTTTAGCAAGTCCCCTGGTTTGGGCCATGCCGGTCCCATTAATACCAACCATTTGTCTGGATTGGCTGCAATTCTTTCCCCACATGCAACAACCTCTCCCAAGATTGCACCGATTGGCAAGGACCCTGGAAGGGCTGCAAATCAGATGTTTGCAAACTCTGGATTAACACAAGGAGCAACCTTTCAGCATTCTATATCCTTTCCTGAGCAAAATGTAAAGGCAAGTCCTAGGTCTATATCTACTTTTGGTGAATCAAGTTCAAGTGCATCAAGTATTGGAACACTGTCCGGCCCTCAATTTCTTTGGGGAAGCCCAACTCCTTACTCCGAGCATTCAAACACTTCTGCCTGGTCTTCATCTTCTGTGGGGCTTCCATTTACATCTAGTGTCCAAAGGCAAGGTTTCCCATATTCTACTAATCGCAGTCCTTTTCTTGGCTCTCACTCTCATCATCATGTTGGATCTGCTCCATCTGGCCTTCCACTTGATAGGCATTTTAGCTACTTCCCTGAGTCACCTGAAGTTTCTCTCATGAGCCCAGTTGCATTTGGGAATTTAAATCACGTTGATGGGAATTTTATGATGAACATAAGTGCTCGTGCATCTGTAGGAGCCAGTGTTGGTCTTTCTGGAAATACCCCTGAAATTAGTTCACCCAATTTCAGAATGATGTCTCTGCCTAGGCATGGTTCCTTGTTCCATGGAAATAGTTTGTATTCTGGACCTGGAGCAACTAACATTGAGGGATTAGCTGAACGTGGACGAAGTAGACGACCTGACAATGGTGGGAACCAAATTGATAGTAAGAAGCTGTACCAGCTTGATCTTGACAAAATCTTCAGTGGTGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTATACATCGAAGATGCTGCTTGCTGCAATTGATGAGAATCACCAGGGTACTTATGACTTCCTCTACTTGCCAATTGACTTTAAGAATAAGTGTAATGTGGGTTATGCTTTTATCAATATGGTGTCTCCTTCACACATCATTGCCTTCTACAAGGCCTTTAATGGGAAAAAGTGGGAGAAGTTCAACAGTGAAAAGGTTGCTTCACTGGCATATGCACGGATACAAGGAAAGGCTGCGCTTGTGATGCATTTCCAGAATTCAAGCTTAATGAATGAGGACAAACGGTGCCGGCCAATTCTCTTTCATTCAGAGGGCCAAGATACTGGCGACCAGGAACCTTTTCTATCCAGCAATTTGAATATATGCATTCGCCAACCAGATGGATCCTATTCAAGTGATTTGTTGGAGAGCCCGAAGGGCAATTTGGATCAGAAGTTAGAGAACGATTAA

Predicted protein sequences of Glyma08g42230

Limit To All Plant Sequences

>Glyma08g42230.2   sequence type=predicted peptide   gene model=Glyma08g42230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKHSGNSSSAHAAAGPSEISPLNIPKKAGSSAWGIPRASDVFHDSSDVSLFSSSLPVLPHEKLDLTDSENYGQPVDVNLITLDKVHKEDEGHDPFDDFETNAIGSMLPDDEEDLLAGIMDDFDLSKLPSQLEDLDENDLFVNGGGFEMDFEPQESLNIGVSKISISDGVASNGIGQYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFELYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVDSPVASSPPGSWAQFGSPVEQNPLSSFSKSPGLGHAGPINTNHLSGLAAILSPHATTSPKIAPIGKDPGRAANQMFANSGLTQGATFQHSISFPEQNVKASPRSISTFGESSSSASSIGTLSGPQFLWGSPTPYSEHSNTSAWSSSSVGLPFTSSVQRQGFPYSTNRSPFLGSHSHHHVGSAPSGLPLDRHFSYFPESPEVSLMSPVAFGNLNHVDGNFMMNISARASVGASVGLSGNTPEISSPNFRMMSLPRHGSLFHGNSLYSGPGATNIEGLAERGRSRRPDNGGNQIDSKKLYQLDLDKIFSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIAFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTGDQEPFLSSNLNICIRQPDGSYSSDLLESPKGNLDQKLEND*

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