Glyma08g42220 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma08g42220): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma08g42220): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma08g42220

Feature Type:	gene_model
Chromosome:	Gm08
Start:	42180496
stop:	42184855
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g42220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42910	AT	Annotation by Michelle Graham. TAIR10: Phosphoribosyltransferase family protein \| chr2:17856396-17858394 FORWARD LENGTH=337	SoyBase	E_val: 0	ISS
GO:0006783	GO-bp	Annotation by Michelle Graham. GO Biological Process: heme biosynthetic process	SoyBase	N/A	ISS
GO:0009116	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleoside metabolic process	SoyBase	N/A	ISS
GO:0009165	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0004749	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ribose phosphate diphosphokinase activity	SoyBase	N/A	ISS
KOG1448	KOG	Ribose-phosphate pyrophosphokinase	JGI		ISS
PTHR10210	Panther	RIBOSE-PHOSPHATE PYROPHOSPHOKINASE	JGI		ISS
PF00156	PFAM	Phosphoribosyl transferase domain	JGI		ISS
UniRef100_G7K0V0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribose-phosphate pyrophosphokinase n=1 Tax=Medicago truncatula RepID=G7K0V0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KY16	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KY16_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g42220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g42220 not represented in the dataset	Glyma08g42220 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g42220

Paralog	Evidence	Comments
Glyma18g12740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g42220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g309300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g42220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g42220

Limit To All Plant Sequences

>Glyma08g42220.2   sequence type=transcript   gene model=Glyma08g42220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAGGGCGGAAGGATATAGCATTGTTTTTCTTATCTAGAAAAAGACCATTTGACCTTCCTTCCATCTTTCTTGGGCACACCAAGCTCTAAAAAAACCCTTTTTTCTTTAGTTTTGTTCCCTCTAAAATTCTCTTTCTGCTTAGTCTCCACGCTCTTGCTTGCTTTTGTGTGAGAGAACAATGGCAATGGTGAAGTCTCCCAAGAAGCAAGTGAACCTCTTCTATTCCCTTGACTGTGAAGACCTTGCCCAGAACGTTGCTCTTCAATCACCCCACATCGTTCTCCAGAACATCAAATGGAGGTCATTTGCTGATGGATTTCCAAATATATATATAAATAATGCAGAAGAACTTCGAGGTCAACATGTTGCTTTCTTGGCATCTTTCAGCTCCCCTGCACATGTCTTTGAACAACTTTCTGTCATATATGCACTCCCTCGTTTATTTGTTGCTTCCTTCACATTGGTATTGCCTTTCTTTCCAACTGGATCCTTTGAGCGAATGGAGGAAGAAGGAGATGTAGCAACTGCCTTCACCCTAGCAAGGATGTTGTCAAATATTCCAATTTCAAGAGGTGGCCCAACTAGTTTAGTCATATATGACATTCATGCCTTGCAGGAGAGGTTTTATTTTGGAGATGAAGTCTTGCCTTTGTTTGAGACTGGTATTCCTCTCTTAAAGCAACGTCTGAGTCAGCTTCCCGATGCTGATAATTTATTGCATTTCCAGATGATGGTGCATGGAAGCGATTCCACAAGCTGTTTGATAATTTTTCACTAGTTGTATGTACTAAGGTTCGTGAAGGTGACAAAAGGATAGTTCGGCTCAAGGAAGGGAATGTCTCTGGTCATCATGTAGTCATTGTTGATGATTTGGTCCAATCTGGAGGCACCCTGATTGAGTGTCAGAAAGTTTTGGCAGCCAATGGTGCAGCAAAGGTGAGTGCCTATGTTACCCATGGCGTGTTTCCTAACCAATCATGGGAGCGATTCACTCATAAAAAAGACGCCTTGGAGAATGCATTTGCCTACTTCTGGATTACAGATTCTTGCCCTCTTACTGTCAAAGCTGTAGCAAATACAGCTCCTTTTGAAGTGCTGAGTCTAGCCGGGTCTATTGCTAATGCCCTACAAATTTGAAGGCAAAATTTTTCGAGGGGAAAGCATTGAACTGTGTTAAAAGGGATTCTCAACTACAATTTTCATCCCTGATTAGCTTTAGAATAACATCTTTTCAGTTGTGATGTGCATTGCTACTAGTTTACCACAATGAAACCTGTTAATTTCTTCTGTACTGTGACCTGATTGAGTGTCAACTCTGGTACAAGACCGTTGAATGCAAATCATCTAATCTTACCTTAACACTACTCATCAACAGGCATCACAATTTGTAGTCAATGTCGCATGCTTGAAAATATGTCCGACTAAAGAATCTTTATAGAAATGGCAGTTCTTCAAAGATCCTCGTGTTTTAATTATTTAGATCGACAAACCTTAGA

>Glyma08g42220.3   sequence type=transcript   gene model=Glyma08g42220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAGGGCGGAAGGATATAGCATTGTTTTTCTTATCTAGAAAAAGACCATTTGACCTTCCTTCCATCTTTCTTGGGCACACCAAGCTCTAAAAAAACCCTTTTTTCTTTAGTTTTGTTCCCTCTAAAATTCTCTTTCTGCTTAGTCTCCACGCTCTTGCTTGCTTTTGTGTGAGAGAACAATGGCAATGGTGAAGTCTCCCAAGAAGCAAGTGAACCTCTTCTATTCCCTTGACTGTGAAGACCTTGCCCAGAACGTTGCTCTTCAATCACCCCACATCGTTCTCCAGAACATCAAATGGAGGTCATTTGCTGATGGATTTCCAAATATATATATAAATAATGCAGAAGAACTTCGAGGTCAACATGTTGCTTTCTTGGCATCTTTCAGCTCCCCTGCACATGTCTTTGAACAACTTTCTGTCATATATGCACTCCCTCGTTTATTTGTTGCTTCCTTCACATTGGTATTGCCTTTCTTTCCAACTGGATCCTTTGAGCGAATGGAGGAAGAAGGAGATGTAGCAACTGCCTTCACCCTAGCAAGGATGTTGTCAAATATTCCAATTTCAAGAGGTGGCCCAACTAGTTTAGTCATATATGACATTCATGCCTTGCAGGAGAGGTTTTATTTTGGAGATGAAGTCTTGCCTTTGTTTGAGACTGGTATTCCTCTCTTAAAGCAACGTCTGAGTCAGCTTCCCGATGCTGATAATGTAGTTATTGCATTTCCAGATGATGGTGCATGGAAGCGATTCCACAAGCTGTTTGATAATTTTTCACTAGTTGTATGTACTAAGGTTCGTGAAGGTGACAAAAGGATAGTTCGGCTCAAGGAAGGGAATGTCTCTGGTCATCATGTAGTCATTGTTGATGATTTGGTCCAATCTGGAGGCACCCTGATTGAGTGTCAGGTCAATTATTCAATTTGCAAATAAAAAAATGTTTATTTAATCAAAAGAAAATTGTTTATTTGAAGCCAACCTCATCGAGTGAGATAAGACTATTGTTTTTGATTATTGATGTTGGGTATGCATACCTAAACTAAGCAACACTTTATCTCTGCATGTGTCTGCATAAGTCAATCAATCAATGCATGTTTCTGCACCTAGATGCGATGCAACTGAATATTTCTCTCTTTTTATTGTTGTCTTCCTGTAGAAAGTTTTGGCAGCCAATGGTGCAGCAAAGGTGAGTGCCTATGTTACCCATGGCGTGTTTCCTAACCAATCATGGGAGCGATTCACTCATAAAAAAGACGCCTTGGAGAATGCATTTGCCTACTTCTGGATTACAGATTCTTGCCCTCTTACTGTCAAAGCTGTAGCAAATACAGCTCCTTTTGAAGTGCTGAGTCTAGCCGGGTCTATTGCTAATGCCCTACAAATTTGAAGGCAAAATTTTTCGAGGGGAAAGCATTGAACTGTGTTAAAAGGGATTCTCAACTACAATTTTCATCCCTGATTAGCTTTAGAATAACATCTTTTCAGTTGTGATGTGCATTGCTACTAGTTTACCACAATGAAACCTGTTAATTTCTTCTGTACTGTGACCTGATTGAGTGTCAACTCTGGTACAAGACCGTTGAATGCAAATCATCTAATCTTACCTTAACACTACTCATCAACAGGCATCACAATTTGTAGTCAATGTCGCATGCTTGAAAATATGTCCGACTAAAGAATCTTTATAGAAATGGCAGTTCTTCAAAGATCCTCGTGTTTTAATTATTTAGATCGACAAACCTTAGA

Coding sequences of Glyma08g42220

Limit To All Plant Sequences

>Glyma08g42220.1   sequence type=CDS   gene model=Glyma08g42220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATGGTGAAGTCTCCCAAGAAGCAAGTGAACCTCTTCTATTCCCTTGACTGTGAAGACCTTGCCCAGAACGTTGCTCTTCAATCACCCCACATCGTTCTCCAGAACATCAAATGGAGGTCATTTGCTGATGGATTTCCAAATATATATATAAATAATGCAGAAGAACTTCGAGGTCAACATGTTGCTTTCTTGGCATCTTTCAGCTCCCCTGCACATGTCTTTGAACAACTTTCTGTCATATATGCACTCCCTCGTTTATTTGTTGCTTCCTTCACATTGGTATTGCCTTTCTTTCCAACTGGATCCTTTGAGCGAATGGAGGAAGAAGGAGATGTAGCAACTGCCTTCACCCTAGCAAGGATGTTGTCAAATATTCCAATTTCAAGAGGTGGCCCAACTAGTTTAGTCATATATGACATTCATGCCTTGCAGGAGAGGTTTTATTTTGGAGATGAAGTCTTGCCTTTGTTTGAGACTGGTATTCCTCTCTTAAAGCAACGTCTGAGTCAGCTTCCCGATGCTGATAATGTAGTTATTGCATTTCCAGATGATGGTGCATGGAAGCGATTCCACAAGCTGTTTGATAATTTTTCACTAGTTGTATGTACTAAGGTTCGTGAAGGTGACAAAAGGATAGTTCGGCTCAAGGAAGGGAATGTCTCTGGTCATCATGTAGTCATTGTTGATGATTTGGTCCAATCTGGAGGCACCCTGATTGAGTGTCAGAAAGTTTTGGCAGCCAATGGTGCAGCAAAGGTGAGTGCCTATGTTACCCATGGCGTGTTTCCTAACCAATCATGGGAGCGATTCACTCATAAAAAAGACGCCTTGGAGAATGCATTTGCCTACTTCTGGATTACAGATTCTTGCCCTCTTACTGTCAAAGCTGTAGCAAATACAGCTCCTTTTGAAGTGCTGAGTCTAGCCGGGTCTATTGCTAATGCCCTACAAATTTGA

>Glyma08g42220.2   sequence type=CDS   gene model=Glyma08g42220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATGGTGAAGTCTCCCAAGAAGCAAGTGAACCTCTTCTATTCCCTTGACTGTGAAGACCTTGCCCAGAACGTTGCTCTTCAATCACCCCACATCGTTCTCCAGAACATCAAATGGAGGTCATTTGCTGATGGATTTCCAAATATATATATAAATAATGCAGAAGAACTTCGAGGTCAACATGTTGCTTTCTTGGCATCTTTCAGCTCCCCTGCACATGTCTTTGAACAACTTTCTGTCATATATGCACTCCCTCGTTTATTTGTTGCTTCCTTCACATTGGTATTGCCTTTCTTTCCAACTGGATCCTTTGAGCGAATGGAGGAAGAAGGAGATGTAGCAACTGCCTTCACCCTAGCAAGGATGTTGTCAAATATTCCAATTTCAAGAGGTGGCCCAACTAGTTTAGTCATATATGACATTCATGCCTTGCAGGAGAGGTTTTATTTTGGAGATGAAGTCTTGCCTTTGTTTGAGACTGGTATTCCTCTCTTAAAGCAACGTCTGAGTCAGCTTCCCGATGCTGATAATTTATTGCATTTCCAGATGATGGTGCATGGAAGCGATTCCACAAGCTGTTTGATAATTTTTCACTAG

>Glyma08g42220.3   sequence type=CDS   gene model=Glyma08g42220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATGGTGAAGTCTCCCAAGAAGCAAGTGAACCTCTTCTATTCCCTTGACTGTGAAGACCTTGCCCAGAACGTTGCTCTTCAATCACCCCACATCGTTCTCCAGAACATCAAATGGAGGTCATTTGCTGATGGATTTCCAAATATATATATAAATAATGCAGAAGAACTTCGAGGTCAACATGTTGCTTTCTTGGCATCTTTCAGCTCCCCTGCACATGTCTTTGAACAACTTTCTGTCATATATGCACTCCCTCGTTTATTTGTTGCTTCCTTCACATTGGTATTGCCTTTCTTTCCAACTGGATCCTTTGAGCGAATGGAGGAAGAAGGAGATGTAGCAACTGCCTTCACCCTAGCAAGGATGTTGTCAAATATTCCAATTTCAAGAGGTGGCCCAACTAGTTTAGTCATATATGACATTCATGCCTTGCAGGAGAGGTTTTATTTTGGAGATGAAGTCTTGCCTTTGTTTGAGACTGGTATTCCTCTCTTAAAGCAACGTCTGAGTCAGCTTCCCGATGCTGATAATGTAGTTATTGCATTTCCAGATGATGGTGCATGGAAGCGATTCCACAAGCTGTTTGATAATTTTTCACTAGTTGTATGTACTAAGGTTCGTGAAGGTGACAAAAGGATAGTTCGGCTCAAGGAAGGGAATGTCTCTGGTCATCATGTAGTCATTGTTGATGATTTGGTCCAATCTGGAGGCACCCTGATTGAGTGTCAGGTCAATTATTCAATTTGCAAATAA

Predicted protein sequences of Glyma08g42220

Limit To All Plant Sequences

>Glyma08g42220.1   sequence type=predicted peptide   gene model=Glyma08g42220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMVKSPKKQVNLFYSLDCEDLAQNVALQSPHIVLQNIKWRSFADGFPNIYINNAEELRGQHVAFLASFSSPAHVFEQLSVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTLARMLSNIPISRGGPTSLVIYDIHALQERFYFGDEVLPLFETGIPLLKQRLSQLPDADNVVIAFPDDGAWKRFHKLFDNFSLVVCTKVREGDKRIVRLKEGNVSGHHVVIVDDLVQSGGTLIECQKVLAANGAAKVSAYVTHGVFPNQSWERFTHKKDALENAFAYFWITDSCPLTVKAVANTAPFEVLSLAGSIANALQI*

>Glyma08g42220.2   sequence type=predicted peptide   gene model=Glyma08g42220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMVKSPKKQVNLFYSLDCEDLAQNVALQSPHIVLQNIKWRSFADGFPNIYINNAEELRGQHVAFLASFSSPAHVFEQLSVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTLARMLSNIPISRGGPTSLVIYDIHALQERFYFGDEVLPLFETGIPLLKQRLSQLPDADNLLHFQMMVHGSDSTSCLIIFH*

>Glyma08g42220.3   sequence type=predicted peptide   gene model=Glyma08g42220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMVKSPKKQVNLFYSLDCEDLAQNVALQSPHIVLQNIKWRSFADGFPNIYINNAEELRGQHVAFLASFSSPAHVFEQLSVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTLARMLSNIPISRGGPTSLVIYDIHALQERFYFGDEVLPLFETGIPLLKQRLSQLPDADNVVIAFPDDGAWKRFHKLFDNFSLVVCTKVREGDKRIVRLKEGNVSGHHVVIVDDLVQSGGTLIECQVNYSICK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain