Glyma08g42140 - SoyBase

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Report for Sequence Feature Glyma08g42140

Feature Type:	gene_model
Chromosome:	Gm08
Start:	42072842
stop:	42080039
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g42140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04920	AT	Annotation by Michelle Graham. TAIR10: sucrose phosphate synthase 3F \| chr1:1391674-1395756 REVERSE LENGTH=1062	SoyBase	E_val: 0	ISS
GO:0001666	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hypoxia	SoyBase	N/A	ISS
GO:0005985	GO-bp	Annotation by Michelle Graham. GO Biological Process: sucrose metabolic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0046524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sucrose-phosphate synthase activity	SoyBase	N/A	ISS
KOG0853	KOG	Glycosyltransferase	JGI		ISS
PTHR12526	Panther	GLYCOSYLTRANSFERASE	JGI		ISS
PTHR12526:SF28	Panther	SUCROSE PHOSPHATE SYNTASE	JGI		ISS
PF00534	PFAM	Glycosyl transferases group 1	JGI		ISS
PF00862	PFAM	Sucrose synthase	JGI		ISS
PF05116	PFAM	Sucrose-6F-phosphate phosphohydrolase	JGI		ISS
UniRef100_G7IXI3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sucrose-phosphate synthase n=1 Tax=Medicago truncatula RepID=G7IXI3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KY06	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KY06_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g42140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g42140

Paralog	Evidence	Comments
Glyma18g12890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g42140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g308600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g42140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g42140

Limit To All Plant Sequences

>Glyma08g42140.1   sequence type=CDS   gene model=Glyma08g42140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGGAATGAATGGATTAATGGGTACCTGGAGGCTATACTTTCAACTGGGGCCTCAACCATTGAAGAGCAAAAGCCTGCACCTGTGACTCTAAAAGATGGGGGGCATTTCAACCCCACAAAGTACTTTGTGGAAGAGGTGGTGGCAAGTGTTGATGAGTCTGATCTGTACCGCACATGGATCAAGGTGGTTGCCACCAGGAACACCAGGGAGAGGAGTTCAAGGTTGGAGAACATGTGCTGGCGCATTTGGCATCTTACACGCAAGAAGAAACAGTTGGAATGGGAGGAAGTCCAGAGGGTAACAAGCCGAAGATTGGAGCGAGAACAAGGACGCAGAGAGGCAACAGAGGACATGTCTGAAGACTTATCAGAAGGAGAAAAAGGTGATAGTGTTGTGGAGATGGTGCAAAGTGATACCCCCCCAACAAAGAAACATTTCCAACGCCAGACTTCTAACTTGGAAGTATGGTCTGATGACAAAAAGGAAAAGAAGCTCTACATTGTCCTCTTAAGTTTGCATGGATTGGTTCGAGGAGAAAACATGGAGCTTGGTCGAGATTCTGATACTGGTGGACAGATTAAATATGTGGTAGAACTTGCTCGTGCACTTGCCAAAATGCCTGGAGTATATAGGGTGGATCTGTTTACACGCCAAATCTCATCACCTGAAATTGACTGGAGCTATGGAGAGCCTACAGAAATGCTAACTCCGGGTGATGATGATGATGATAACCTTGGGGAGAGCAGTGGTGCATATATCATAAGAATACCCTTCGGTCCACGCAATAAATACCTCCGGAAAGAACTTCTTTGGCCTTATATTCAAGAATTTGTGGATGGAGCATTAGCTCACATTCTCAATATGTCAAAAGTATTGAGTGAACAAGTTGGTGGGGGCCAACCTGTCTGGCCATATGTAATTCATGGACATTATGCTGATGCTGGAGATAGTGCTGCTATTCTTTCTGGTGCTTTAAATGTACCAATGGTTCTGACAGGTCATTCCCTTGGAAGAAACAAGCTTGAACAACTTATCAAGCAGGGACGCCAATCCAAAGAGGATATCAATTCGACTTATAAGATGATGAGGAGGATTGAGGCAGAAGAACTTTCTCTGGATGCAGCAGAACTTGTTATCACTAGTACAAGACAAGAAATTGATGAGCAGTGGGGACTTTATGATGGATTTGATGTCAAGCTTGAGAAAGTATTGCGTGCTCGTGCTAGGCGTGGTGTCAACTGTCATGGTCGGTACATGCCAAGGATGGCGGTTATCCCTCCTGGTATGGACTTTAGCAATGTTGTTCGTCAAGAAGATGGCCCTGAAATTGATGGAGAGCTTGCTCAGCTTACTGCTAGTGTTGAAGGATTTTCACCAAAAGCAATGCCTTCAATTTGGTTAGACGTAATGCGTTTCTTTAGAAATCCTCACAAGCCAGTGATCTTGGCCTTATCAAGGCCAGATCCAAAGAAGAACTTAACCACTCTGTTAAAAGCCTTTGGAGAAAGCCGCCCCTTAAGAGAACTTGCTAATCTTACTCTCATAATGGGAAATAGGGATGACATAGATGAGATGTCTTCTGGGAATGCTAGTGTGCTCACAACAGTGTTGAAAATGATTGATAAGTATGACCTATATGGCCAAGTGGCATACCCTAAACATCACAAGCAATCCGATGTTCCGGAGATATACCGATACGCTGCAAGAACAAAGGGTGTTTTCATCAATCCTGCTTTAGTGGAACCTTTTGGTCTTACTTTAATTGAGGCAGCAGCACATGGGCTTCCAATGGTGGCAACTAAAAATGGGGGACCGGTGGACATTCATCGGGCCCTGAACAATGGTTTGCTTGTGGATCCTCATGATCAGAAAGCAATTACTGATGCATTGATCAAGTTGTTGTCAGAAAAAAACCTGTGGCATGATTGCAGGAAAAATGGTTGGAAGAACATACACCTTTTCTCGTGGCCCGAGCACTGCCGTACTTATTTGACTAGGGTGGCTGCCTGCAGGATGAGGCATCCACAATGGCAAACCAACACTCCAGGGAATGATATAGCTGATGAAGAGTCTTTCAATGACTCACTAAAGGATGTTCAGGACATGTCCCTTAGGCTCTCAATTGATGCTGACTTAGCAGGTTTAAGTTCTGGACCCGACATGCAAGACCAAGTGAAGCGTCTCCTAAGCAGGATGAAGAAGCCAGATTCTGGTGGTTCAAATGACACTGATGGTGGGAATAAGATGCCTGACAATGTAACTGGGAAATATCCTCTACTGTGGAGAAGACGTCGGTTGATTGTTATCGCACTAGATTTATATGACAACAATGGAGCTCCTGATAAGAAGATGATCCAAATAGTGCAAAGGATCATTAAAGCTTCTCAACTAGACCCTCAAAATGCAAGAGTTTCAGGATTTGCTTTGTCAACAGCTATGCCAATAAGAGAAACCATAGAGTTCCTCAAATCAGGCAACATTCAAGTAAATGATTTTGATGTTTTGATTTGCAGTAGTGGTAGTGAAGTTTACTATCCTGGTACTTACACGGAAGATGGAAAGCTTTTGCCTGATCCGGATTATGAAGCGCATATTGACTATCGTTGGGGTTGTGAAGGTCTTAAGAAAACCATTTGGAATCTTATGAATACTGCTGAAGGTGAAGACAAAAAATCTTCCAGCCCCATTGTGGAAGATTCGAAATCTAGCAATGCTCATTGCATCTCATACAAAATAAAGGATCTCAGTAAGGCAAAGAGAGTTGATGACTTGAGACAGAAGCTTCGGATGCGAGGCCTACGTTGTCATCCTATGTACTGCAGGGGATCATCTAGTATGCAGGTTATTCCACTCCTTGCATCTAGAGCACAGGCACTCAGGTATCTCTTTGTCCGTTGGGGACTGAATGTTGCAAACATGTTTGTCTTTCTTGGAGAAACTGGGGACACTGATTATGAAGAGTTGATTTCTGGAACTCACAAGACCATAATATTGAAGGATGTTGTGTCTAATGGTTCAGAAGGAATACTTAGAGGTCCAGGAAGCTACCATAGAGAGGATGTTGTACCCAATGAGAGTCCTCTTGTTGCAAGCATTAGTGAAACAACTGAGGACAAGATTGCCAATACTTTGAAGGAACTATCAAAATCCGGGGCAATGTGA

Predicted protein sequences of Glyma08g42140

Limit To All Plant Sequences

>Glyma08g42140.1   sequence type=predicted peptide   gene model=Glyma08g42140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGNEWINGYLEAILSTGASTIEEQKPAPVTLKDGGHFNPTKYFVEEVVASVDESDLYRTWIKVVATRNTRERSSRLENMCWRIWHLTRKKKQLEWEEVQRVTSRRLEREQGRREATEDMSEDLSEGEKGDSVVEMVQSDTPPTKKHFQRQTSNLEVWSDDKKEKKLYIVLLSLHGLVRGENMELGRDSDTGGQIKYVVELARALAKMPGVYRVDLFTRQISSPEIDWSYGEPTEMLTPGDDDDDNLGESSGAYIIRIPFGPRNKYLRKELLWPYIQEFVDGALAHILNMSKVLSEQVGGGQPVWPYVIHGHYADAGDSAAILSGALNVPMVLTGHSLGRNKLEQLIKQGRQSKEDINSTYKMMRRIEAEELSLDAAELVITSTRQEIDEQWGLYDGFDVKLEKVLRARARRGVNCHGRYMPRMAVIPPGMDFSNVVRQEDGPEIDGELAQLTASVEGFSPKAMPSIWLDVMRFFRNPHKPVILALSRPDPKKNLTTLLKAFGESRPLRELANLTLIMGNRDDIDEMSSGNASVLTTVLKMIDKYDLYGQVAYPKHHKQSDVPEIYRYAARTKGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDIHRALNNGLLVDPHDQKAITDALIKLLSEKNLWHDCRKNGWKNIHLFSWPEHCRTYLTRVAACRMRHPQWQTNTPGNDIADEESFNDSLKDVQDMSLRLSIDADLAGLSSGPDMQDQVKRLLSRMKKPDSGGSNDTDGGNKMPDNVTGKYPLLWRRRRLIVIALDLYDNNGAPDKKMIQIVQRIIKASQLDPQNARVSGFALSTAMPIRETIEFLKSGNIQVNDFDVLICSSGSEVYYPGTYTEDGKLLPDPDYEAHIDYRWGCEGLKKTIWNLMNTAEGEDKKSSSPIVEDSKSSNAHCISYKIKDLSKAKRVDDLRQKLRMRGLRCHPMYCRGSSSMQVIPLLASRAQALRYLFVRWGLNVANMFVFLGETGDTDYEELISGTHKTIILKDVVSNGSEGILRGPGSYHREDVVPNESPLVASISETTEDKIANTLKELSKSGAM*

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