Glyma08g42100 - SoyBase

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Report for Sequence Feature Glyma08g42100

Feature Type:	gene_model
Chromosome:	Gm08
Start:	41999064
stop:	42001005
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g42100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G45500	AT	Annotation by Michelle Graham. TAIR10: RNI-like superfamily protein \| chr5:18432636-18434951 REVERSE LENGTH=771	SoyBase	E_val: 7.00E-28	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0045087	GO-bp	Annotation by Michelle Graham. GO Biological Process: innate immune response	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR23155	Panther	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	JGI		ISS
PTHR23155:SF128	Panther	NBS-LRR RESISTANCE PROTEIN RGH1-LIKE (PUTATIVE UNC	JGI		ISS
UniRef100_I1KY02	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KY02_SOYBN	SoyBase	E_val: 1.00E-133	ISS
UniRef100_Q8LJ95	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NBS-LRR resistance protein RGH1-like n=2 Tax=Oryza sativa RepID=Q8LJ95_ORYSJ	SoyBase	E_val: 2.00E-33	ISS

Expression Patterns of Glyma08g42100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g42100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g308100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g42100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g42100

Limit To All Plant Sequences

>Glyma08g42100.3   sequence type=transcript   gene model=Glyma08g42100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTCATCATTTTTTCATAAAATCACACAATCTGCCACTGCTTAATTTGTTCCTCAATCTTATTACAAAAACTATATTGTTTCATTCATCAATTTTTCATAAAGTCACAAAATCTCCCAATACTCTGTCCCTCAATATCTTATTGCAGAAGAAATGTCTATTCGAACAAATCCCTTGAAAGCAGTGCCTACACTGTTGAAGCGCCTAGTGACAGTAGAAAAACAAGCGATTTTAAAGATTTGAAGTCTGAGTTGAACAAGATAAAGGATCTGTTTTGGAAGGTGAAGACAAATGAAGAAGAACTCCTTGACACGGTTGTGGATGGCTATATTCGCAACAAAAACATACGTGAATAAGAGTCTCAACTCAAAAGTTGTTGCCAGCTTCTGATATAGAAGCTGCCGGATCATCAGGATAAACATTTGAGGATGTGAAGCTCAAGCAGAGAGAAGAAGCGAACAGAGCACTCCCTAAAAGCCCACAATTTGAGGACTTGGAAATGTTTAAGGGTAATGGAAAGTGTCCTGTTGTGAATAAATTTAAAATTAATCCTTGCATCCATTGTTACAAAATCATGAAGAACAACTTTGTGGAGTTTATTCACAACTAGCAGCCTCATCTCATCACCCAAATACTTTGCATCGTAGTTTGGTACTTGACCAACAAAAAGTTAAACTAAATGATAGGTTTGGCTTGAAATCTACCCATTGGAGAGGTGTTTTTTTATGTTGGTGCTAGTTATCTCAATGGATGGCCAAAATGAAGCAGTTGGAGGTCCTTCAACTTGGTCGTTGGCTGCATGATTCACCAAAACATCATGCATATTGAAGTGGACAATGAAGAATTCTTGAAGGAGTTAAGGGATCAAAAGCATTTAGCCTCCGTGGGATATGAAGAATATTCGAGCTGCCACCCTCCATTTTCCAACTTGAGAGCCTAGCAGTTCTAGGTCTCAAGGCCTGTCACAATCTAGAAACCCTACCTAATGATATTGAATCATTGAAAAATATCAGATGGTCGGATTTGTCTCAATGCTACTTGTTGGAGAGAATGCCAAAAAGGATTGAGAAGCTGACCAATGTTGAAGTACTCAAGGGATTTGTAATTGGTAGTTCTAGCAAGAGTAGCTACCAAATATCAGATCTTGCAGATTTGAAAAATCTGGAGCGACTCAGCATACATATAGGAAGTGGGGCCATAATCGATGAAAATGAGTTTGAAAGCTTGAAAGGGTTGTCAAAACTTGAGCATCTCATAATATCATGGGGTGTGTGTGGCACAAGGTATACCGATGATATCCGGATCAGTTTGCTTTCAAATTTGAAAAAGTTGCATCTTGATGAAGACTTTCCTGAAGAAAGTATTCCAAGATTGTTGAAGCCTACCAATCTACCCGTGAGTTTGAAAGATCTAAATTTAGCCGGAGGGAAACTAGCAAGTATGGATCATGGAAAATTAGATCACTCGGACTCCTGCAAGTTGGAGATCATACATCTTAAGTACCTAAAACATTTGATTGTTGACCCAGAAAAATTGCAGACTTTGTTTCCTTCATCGGTATACGTAGAAATAAAAGACCTACAAAACCTTCTATACCATGAATGGATTAAAGATGAAGAGAGGTGAAAGTGCATACATGTCATAGGGCTATCCAAATGTGGTACCTGCAATCCAGCAAACAATCTCAAGTTCATCGCACAGTTTCTATCAACTTATGTGGATTGAATTTGTATACCATCATATCCTTGTATGAAATT

Coding sequences of Glyma08g42100

Limit To All Plant Sequences

>Glyma08g42100.2   sequence type=CDS   gene model=Glyma08g42100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCAGTTGGAGCTGCCACCCTCCATTTTCCAACTTGAGAGCCTAGCAGTTCTAGGTCTCAAGGCCTGTCACAATCTAGAAACCCTACCTAATGATATTGAATCATTGAAAAATATCAGATGGTCGGATTTGTCTCAATGCTACTTGTTGGAGAGAATGCCAAAAAGGATTGAGAAGCTGACCAATGTTGAAGTACTCAAGGGATTTGTAATTGGTAGTTCTAGCAAGAGTAGCTACCAAATATCAGATCTTGCAGATTTGAAAAATCTGGAGCGACTCAGCATACATATAGGAAGTGGGGCCATAATCGATGAAAATGAGTTTGAAAGCTTGAAAGGGTTGTCAAAACTTGAGCATCTCATAATATCATGGGGTGTGTGTGGCACAAGGTATACCGATGATATCCGGATCAGTTTGCTTTCAAATTTGAAAAAGTTGCATCTTGATGAAGACTTTCCTGAAGAAAGTATTCCAAGATTGTTGAAGCCTACCAATCTACCCGTGAGTTTGAAAGATCTAAATTTAGCCGGAGGGAAACTAGCAAGTATGGATCATGGAAAATTAGATCACTCGGACTCCTGCAAGTTGGAGATCATACATCTTAAGTACCTAAAACATTTGATTGTTGACCCAGAAAAATTGCAGACTTTGTTTCCTTCATCGGTATACGTAGAAATAAAAGACCTACAAAACCTTCTATACCATGAATGGATTAAAGATGAAGAGAGGTGA

>Glyma08g42100.3   sequence type=CDS   gene model=Glyma08g42100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAAAAAGGATTGAGAAGCTGACCAATGTTGAAGTACTCAAGGGATTTGTAATTGGTAGTTCTAGCAAGAGTAGCTACCAAATATCAGATCTTGCAGATTTGAAAAATCTGGAGCGACTCAGCATACATATAGGAAGTGGGGCCATAATCGATGAAAATGAGTTTGAAAGCTTGAAAGGGTTGTCAAAACTTGAGCATCTCATAATATCATGGGGTGTGTGTGGCACAAGGTATACCGATGATATCCGGATCAGTTTGCTTTCAAATTTGAAAAAGTTGCATCTTGATGAAGACTTTCCTGAAGAAAGTATTCCAAGATTGTTGAAGCCTACCAATCTACCCGTGAGTTTGAAAGATCTAAATTTAGCCGGAGGGAAACTAGCAAGTATGGATCATGGAAAATTAGATCACTCGGACTCCTGCAAGTTGGAGATCATACATCTTAAGTACCTAAAACATTTGATTGTTGACCCAGAAAAATTGCAGACTTTGTTTCCTTCATCGGTATACGTAGAAATAAAAGACCTACAAAACCTTCTATACCATGAATGGATTAAAGATGAAGAGAGGTGA

Predicted protein sequences of Glyma08g42100

Limit To All Plant Sequences

>Glyma08g42100.2   sequence type=predicted peptide   gene model=Glyma08g42100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKQLELPPSIFQLESLAVLGLKACHNLETLPNDIESLKNIRWSDLSQCYLLERMPKRIEKLTNVEVLKGFVIGSSSKSSYQISDLADLKNLERLSIHIGSGAIIDENEFESLKGLSKLEHLIISWGVCGTRYTDDIRISLLSNLKKLHLDEDFPEESIPRLLKPTNLPVSLKDLNLAGGKLASMDHGKLDHSDSCKLEIIHLKYLKHLIVDPEKLQTLFPSSVYVEIKDLQNLLYHEWIKDEER*

>Glyma08g42100.3   sequence type=predicted peptide   gene model=Glyma08g42100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPKRIEKLTNVEVLKGFVIGSSSKSSYQISDLADLKNLERLSIHIGSGAIIDENEFESLKGLSKLEHLIISWGVCGTRYTDDIRISLLSNLKKLHLDEDFPEESIPRLLKPTNLPVSLKDLNLAGGKLASMDHGKLDHSDSCKLEIIHLKYLKHLIVDPEKLQTLFPSSVYVEIKDLQNLLYHEWIKDEER*

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