Report for Sequence Feature Glyma08g42080
Feature Type: gene_model
Chromosome: Gm08
Start: 41963888
stop: 41972689
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g42080
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G38020 AT
Annotation by Michelle Graham. TAIR10: vacuoleless1 (VCL1) | chr2:15910098-15914190 REVERSE LENGTH=858
SoyBase E_val: 0 ISS
GO:0006486 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein glycosylation
SoyBase N/A ISS
GO:0006487 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation
SoyBase N/A ISS
GO:0006623 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole
SoyBase N/A ISS
GO:0006886 GO-bp
Annotation by Michelle Graham. GO Biological Process: intracellular protein transport
SoyBase N/A ISS
GO:0007030 GO-bp
Annotation by Michelle Graham. GO Biological Process: Golgi organization
SoyBase N/A ISS
GO:0007033 GO-bp
Annotation by Michelle Graham. GO Biological Process: vacuole organization
SoyBase N/A ISS
GO:0010228 GO-bp
Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem
SoyBase N/A ISS
GO:0010413 GO-bp
Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process
SoyBase N/A ISS
GO:0016926 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein desumoylation
SoyBase N/A ISS
GO:0045492 GO-bp
Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process
SoyBase N/A ISS
GO:0050665 GO-bp
Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0009705 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2280
KOG
Vacuolar assembly/sorting protein VPS16
JGI ISS
PTHR12811 Panther
VACUOLAR PROTEIN SORTING VPS16
JGI ISS
PF04840 PFAM
Vps16, C-terminal region
JGI ISS
PF04841 PFAM
Vps16, N-terminal region
JGI ISS
UniRef100_G7IXE7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar protein sorting-associated protein-like protein n=1 Tax=Medicago truncatula RepID=G7IXE7_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI00023389DF UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI00023389DF related cluster n=1 Tax=unknown RepID=UPI00023389DF
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g42080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g42080
Paralog Evidence Comments
Glyma18g13250 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g42080 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g307900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g42080
Coding sequences of Glyma08g42080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g42080.1 sequence type=CDS gene model=Glyma08g42080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCAACGTCTCCGTCGCGGCGGAGTGGCAGCTCCTCTACAACCGCTACTACCGCAAGCCAGAGCTCTACCCTATGCCGTGGAAGCACGTGGACCTCGCCCGGACCAAGGTCGCCGCCGCGCCCTTCGGCGGCCCCGTCGCCGTCATCCGCGATGACTCAAAGATCGTCCAGCTCCACGCCGAGTCCGCTCTCCGCAAGCTCCGCCTCTTCTCCTCCTCCGGCCGCCCCCTCGCCGACGCCGTATGGCGCCACCCCGGCGGCCGCCTCGTCGGCATGTCCTGGACCGACGATCAAACTCTTCTCTGCGTCGTCCAGGACGGCACCGTTTACCGCTACGACGTCCACGCGAACCTAATCGAACCAAACCTCTCCCTCGGGAAAGAGTGCTTCGAAGACAACGTTGCGGATTGCGCGTTTTGGGGGCACGGTTTGGTCTGCATCACCGAGGCGAATCAGTTGTTCTGTATTGCTGATTTCAGGAACCCTAGCGCGGTGAAGCTCGCGGATCCCGGGATCGACGAGATGCCGCATTGTATGGCCGTGATTGAGCCGCAGTACACGGTTTCGGGGAATGTCGAGGTTCTGCTCGGCGTGGATGATGCTGTGGTGCTCGCTGTGGAGGAGGATGGCGTGCAGAGGCTTGGAGAGGGATTGTTGCGGGGGCCGCTGCAGAAGATGGTGGTTTCGCGCGACGGCAAGTGGCTCGCTTCGTTTACCCATGATGGGAGGCTCTTGGTGACGACTTCGGACTTGACTGGAGTTATCATCGAGAGGGATTGCGAGTCAGCTCTTCCTCCGCAGCAGATTGCTTGGTGTGGAATGGATGCTGTGCTGCTGTACTGGGATGATATGCTTTTAATGATGGGTCCTGAGGGAGAGCCAGTTCACTACCTTTTTGATGAACCAATAATTCTTATACCTGAGTGTGATGGAGTGAGGATATTGTCCAATACTAGTATGGAATTTCTACAGCGGGTGCCTGATTCCACCGTTTCGATCTTCACAATTGGAAGTACATCACCTGCTGCTTTACTATATGATGCCTTGGATCATTTTGATAGGCGAAGTGCCAAGGCAGATGAAAATTTGAGATTGATAAGATCATCCCTTCCTGAGGCTGTTGAAGCATGTGTTGATGCTGCAGGTCATGAATTTGATGTTTCACGCCAGCAAACTCTCCTAAGGGCAGCCAGTTATGGGCAAGCCTTTTGTAGCAATTTTCAACGTGATCGTATCCAAGAGATGTGTAAAATTCTGCGGGTCTTGAATGCAGTGCGCAGCCCTGAGATTGGCATTCCTCTTAGTATTCAGCAATACAAGTTGCTTACACCATCTGTTCTGATTGGTCGCCTGATTAATGCTCACCAACATCTGCTTGCACTGAAAGTATCAGAATATCTTGGAATGAATCAAGAGGTGGTGATAATGCACTGGGCATGTTCAAAGATAACTGCTTCACTGGCAATTCCTGATGTGACTCTTCTGGAGATTCTGCTGGATAAGTTAAAACTGTGCAAAGGCATTTCCTATGCAGCAGTTGCTGCTCATGCAGACAAAAATGACCGACGAAAGTTAGCTGCCTTGCTTGTTGAACACGAGCCTCGTTCATCGAAACAGGTTCCTCTCCTGTTAAGCATTGGAGAAGAAGATATAGCCTTGATAAAGGCGACCGAATGTGGTGATACAGATCTTGTTTACCTTGTACTTTTTCATATTTGGCAAAAGAGGCAACCATTGGAGTTCTTTGGCACTATACAGGCGAGACCATTGGCACGGGACTTATTTGTAACTTATGCACGGATTTATAAACACGAATTTTTGAAGGATTTCTTCTTATCAACTGGGCAACTTCAAGATGTGGCATTTCTTTTGTGGAAAGAATCATGGGAACTTGGGAAAAATCCCATGGCAAGCAAAGGATCTCCACTTCATGGTCCTCGAATAAAACTTATTGAGAAGGCACATGGTCTTTTTGCTGAAACCAAGGAGCATACCTTTGAATCAAAGGCAGCTGAAGAGCATGCAAAACTGTTAAGAATTCAGCATGAACTTGAAGTGACTACAAAGCAAGCCATTTTTGTGGATTCTAGTATAAGTGATACAATCCGTACTTGTATTGTCTTGGGAAATAATCGAGCTGCAATGAAAGTGAAAACGGAATTTAAGGTGTCTGAGAAGAGATGGTATTGGCTTAAAGTTTTTGCATTAGCTACAATCAAGGATTGGGTTGCCCTAGAGAAATTTTCAAAGGAGAAGAAACCTCCAATTGGTTATAGGCCATTTGTGGAGGCATGCATTGAAGCAGACGAAAAGGGAGAAGCTATTAAATATATCCCAAAACTTGCAGACCCTCGAGAAAGAGCTGAGTCATATGCTCGAATTGGTATGGCCAAGGAAGCTGCCGATGCTGCTTCACAGGCAAAAGATGGTGAATTACTTGGTCGGTTGAAATTGACTTTTGCACAAAATGCAGCAGCTTCATCAATATTTGATACTCTTCGAGATCGGTTGTCTTTCCAAGGTGCTTAA
Predicted protein sequences of Glyma08g42080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g42080.1 sequence type=predicted peptide gene model=Glyma08g42080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MANVSVAAEWQLLYNRYYRKPELYPMPWKHVDLARTKVAAAPFGGPVAVIRDDSKIVQLHAESALRKLRLFSSSGRPLADAVWRHPGGRLVGMSWTDDQTLLCVVQDGTVYRYDVHANLIEPNLSLGKECFEDNVADCAFWGHGLVCITEANQLFCIADFRNPSAVKLADPGIDEMPHCMAVIEPQYTVSGNVEVLLGVDDAVVLAVEEDGVQRLGEGLLRGPLQKMVVSRDGKWLASFTHDGRLLVTTSDLTGVIIERDCESALPPQQIAWCGMDAVLLYWDDMLLMMGPEGEPVHYLFDEPIILIPECDGVRILSNTSMEFLQRVPDSTVSIFTIGSTSPAALLYDALDHFDRRSAKADENLRLIRSSLPEAVEACVDAAGHEFDVSRQQTLLRAASYGQAFCSNFQRDRIQEMCKILRVLNAVRSPEIGIPLSIQQYKLLTPSVLIGRLINAHQHLLALKVSEYLGMNQEVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKNDRRKLAALLVEHEPRSSKQVPLLLSIGEEDIALIKATECGDTDLVYLVLFHIWQKRQPLEFFGTIQARPLARDLFVTYARIYKHEFLKDFFLSTGQLQDVAFLLWKESWELGKNPMASKGSPLHGPRIKLIEKAHGLFAETKEHTFESKAAEEHAKLLRIQHELEVTTKQAIFVDSSISDTIRTCIVLGNNRAAMKVKTEFKVSEKRWYWLKVFALATIKDWVALEKFSKEKKPPIGYRPFVEACIEADEKGEAIKYIPKLADPRERAESYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAAASSIFDTLRDRLSFQGA*