Report for Sequence Feature Glyma08g42070
Feature Type: gene_model
Chromosome: Gm08
Start: 41957316
stop: 41962735
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g42070
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G06550 AT
Annotation by Michelle Graham. TAIR10: ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr1:2003834-2006564 REVERSE LENGTH=387
SoyBase E_val: 0 ISS
GO:0006635 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation
SoyBase N/A ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0080167 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to karrikin
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0003860 GO-mf
Annotation by Michelle Graham. GO Molecular Function: 3-hydroxyisobutyryl-CoA hydrolase activity
SoyBase N/A ISS
KOG1684
KOG
Enoyl-CoA hydratase
JGI ISS
PTHR11941 Panther
ENOYL-COA HYDRATASE-RELATED
JGI ISS
PTHR11941:SF19 Panther
3-HYDROXYACYL-COA DEHYDROGENASE
JGI ISS
PF00378 PFAM
Enoyl-CoA hydratase/isomerase family
JGI ISS
UniRef100_B9SKX9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Enoyl-CoA hydratase, mitochondrial, putative n=1 Tax=Ricinus communis RepID=B9SKX9_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1KXZ9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXZ9_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g42070
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g42070
Paralog Evidence Comments
Glyma18g13260 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g42070 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g307800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g42070
Transcripts of Glyma08g42070
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g42070.2 sequence type=transcript gene model=Glyma08g42070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CTTTTATTCTATCTCACTTTCATACTCACCCTTATTGCAGGTTAACTTCAGCCTTATTTTGACCTCAATGGCACCAAGTTCGGCAGTGCCAGATGAACAGGTTGTTGTTGGAGAGGAGATAGAGCATGTAAGAGTGATCACTTTGAACAGGCCAAGGCAATTGAATGCCATCTCACCAGAATTGGTTTCTCTGCTAGCAACATATTTGGAAAAGTGGGAGAAGGATGAGGAAGCAGAGCTAGTTATCATAAAGGGATCTGGTAGGGCTTTTTGCGCTGGAGGGGATTTGAGAGTGTTCTATGACGGCAGGAAAATAAAGGATGCCTGTCTTGAAGTGGTCTACAGATTTTACTGGCTTTGCTATCACATTAGTACCTATAAGAAAACCCAGGTTGCGCTTGTTCATGGAATTTCAATGGGTGGAGGTGCAGCTTTGATGGTCCCATTGAAGTTCTCAGTTGTAACAGAAAAAACTGTTTTTGCCACTCCTGAAGCAAGTTTTGGATTTCATATTGATTGTGGCTTCTCATACTACCACTCTCGTTTACCAGGGCATTTAGGAGAATACTTGGCACTTACTGGAGGAAGGTTGAGTGGGAAGGAAATAGTTGCTGCTGGACTGGCAACCCATTTTGTCCCTTTTGAGAAAATTGTTGAGCTAGAGAACCGCCTTATTAGCTTGAATTCTGGTGATGAGAATGCCGTAAGATCAGTAATTGAAGAATTCTCTTCAGAAGTCAAACTTGATGAAGAGAGTATCTTAAACAAGCAGTCAATAATCAAAGAGTGCTTCTCAAAAGACTCCGTAGAGGAAATTATAAAATCATTAGAAGCAGAAGCAAACAACAAAGGAAATGTATGGATAGGTGCAGTTTTAAAAGGAATGAAAAGATCATCACCAACTGCATTGAAAATAGCATTAAGATCGGTTCGTGAAGGAAGGAATCAAACATTATCTGAATGCTTAAAAAAGGAATTCAGATTAACAATGAATATACTGCGAACTACAATATCTGAGGATATGTATGAGGGTATTAGAGCTCTCACCATTGACAAAGATAATGCTCCAAAGTGGGAACCTTCATCCCTTGACAAAGTAGAGGACGGAAAGTTGGACTTGATCTTTCAGCCATTTGAGAAGAATTTGGAGCTGCAGATTCCAGAAAGTGAGGAATACAGGTGGGATGGTAAATATGAGAATTCAGCTTATGCCCTTCCAAATTGAGAAATTTCAATCTGTTAAATGTTGCCTCTTTTAGAATTCCTCCAAAAATGTCATGGATTTCTCTACTTTCTGGTATGCATTAATCCAGGCTACTGTTCTGAGTTCTTGAATAAACTTCAACATATGAAAGAAGTTCATGAAGAGTCCTCTAAGTTTGTTGTTGCTATTTTGCGGGAAAAAAAATCATGTAATTTCAGATGTTATGAATATAGATGAATTGTGCTGTAAAAGTATAATGCTTCCCCTAGAAAGCACATTAAAATAAGGTTTTTTTTTTTAAGAAAATTATTTC
Coding sequences of Glyma08g42070
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g42070.1 sequence type=CDS gene model=Glyma08g42070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCACCAAGTTCGGCAGTGCCAGATGAACAGGTTGTTGTTGGAGAGGAGATAGAGCATGTAAGAGTGATCACTTTGAACAGGCCAAGGCAATTGAATGCCATCTCACCAGAATTGGTTTCTCTGCTAGCAACATATTTGGAAAAGTGGGAGAAGGATGAGGAAGCAGAGCTAGTTATCATAAAGGGATCTGGTAGGGCTTTTTGCGCTGGAGGGGATTTGAGAGTGTTCTATGACGGCAGGAAAATAAAGGATGCCTGTCTTGAAGTGGTCTACAGATTTTACTGGCTTTGCTATCACATTAGTACCTATAAGAAAACCCAGGTTGCGCTTGTTCATGGAATTTCAATGGGTGGAGGTGCAGCTTTGATGGTCCCATTGAAGTTCTCAGTTGTAACAGAAAAAACTGTTTTTGCCACTCCTGAAGCAAGTTTTGGATTTCATATTGATTGTGGCTTCTCATACTACCACTCTCGTTTACCAGGGCATTTAGGAGAATACTTGGCACTTACTGGAGGAAGGTTGAGTGGGAAGGAAATAGTTGCTGCTGGACTGGCAACCCATTTTGTCCCTTTTGAGAAAATTGTTGAGCTAGAGAACCGCCTTATTAGCTTGAATTCTGGTGATGAGAATGCCGTAAGATCAGTAATTGAAGAATTCTCTTCAGAAGTCAAACTTGATGAAGAGAGTATCTTAAACAAGCAGTCAATAATCAAAGAGTGCTTCTCAAAAGACTCCGTAGAGGAAATTATAAAATCATTAGAAGCAGAAGCAAACAACAAAGGAAATGTATGGATAGGTGCAGTTTTAAAAGGAATGAAAAGATCATCACCAACTGCATTGAAAATAGCATTAAGATCGGTTCGTGAAGGAAGGAATCAAACATTATCTGAATGCTTAAAAAAGGAATTCAGATTAACAATGAATATACTGCGAACTACAATATCTGAGGATATGTATGAGGGTATTAGAGCTCTCACCATTGACAAAGATAATGCTCCAAAGTGGGAACCTTCATCCCTTGACAAAGTAGAGGACGGAAAGTTGGACTTGATCTTTCAGCCATTTGAGAAGAATTTGGAGCTGCAGATTCCAGAAAGTGAGGAATACAGGTGGGATGGTAAATATGAGAATTCAGCTTATGCCCTTCCAAATTGA
>Glyma08g42070.2 sequence type=CDS gene model=Glyma08g42070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCACCAAGTTCGGCAGTGCCAGATGAACAGGTTGTTGTTGGAGAGGAGATAGAGCATGTAAGAGTGATCACTTTGAACAGGCCAAGGCAATTGAATGCCATCTCACCAGAATTGGTTTCTCTGCTAGCAACATATTTGGAAAAGTGGGAGAAGGATGAGGAAGCAGAGCTAGTTATCATAAAGGGATCTGGTAGGGCTTTTTGCGCTGGAGGGGATTTGAGAGTGTTCTATGACGGCAGGAAAATAAAGGATGCCTGTCTTGAAGTGGTCTACAGATTTTACTGGCTTTGCTATCACATTAGTACCTATAAGAAAACCCAGGTTGCGCTTGTTCATGGAATTTCAATGGGTGGAGGTGCAGCTTTGATGGTCCCATTGAAGTTCTCAGTTGTAACAGAAAAAACTGTTTTTGCCACTCCTGAAGCAAGTTTTGGATTTCATATTGATTGTGGCTTCTCATACTACCACTCTCGTTTACCAGGGCATTTAGGAGAATACTTGGCACTTACTGGAGGAAGGTTGAGTGGGAAGGAAATAGTTGCTGCTGGACTGGCAACCCATTTTGTCCCTTTTGAGAAAATTGTTGAGCTAGAGAACCGCCTTATTAGCTTGAATTCTGGTGATGAGAATGCCGTAAGATCAGTAATTGAAGAATTCTCTTCAGAAGTCAAACTTGATGAAGAGAGTATCTTAAACAAGCAGTCAATAATCAAAGAGTGCTTCTCAAAAGACTCCGTAGAGGAAATTATAAAATCATTAGAAGCAGAAGCAAACAACAAAGGAAATGTATGGATAGGTGCAGTTTTAAAAGGAATGAAAAGATCATCACCAACTGCATTGAAAATAGCATTAAGATCGGTTCGTGAAGGAAGGAATCAAACATTATCTGAATGCTTAAAAAAGGAATTCAGATTAACAATGAATATACTGCGAACTACAATATCTGAGGATATGTATGAGGGTATTAGAGCTCTCACCATTGACAAAGATAATGCTCCAAAGTGGGAACCTTCATCCCTTGACAAAGTAGAGGACGGAAAGTTGGACTTGATCTTTCAGCCATTTGAGAAGAATTTGGAGCTGCAGATTCCAGAAAGTGAGGAATACAGGTGGGATGGTAAATATGAGAATTCAGCTTATGCCCTTCCAAATTGA
Predicted protein sequences of Glyma08g42070
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g42070.1 sequence type=predicted peptide gene model=Glyma08g42070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAPSSAVPDEQVVVGEEIEHVRVITLNRPRQLNAISPELVSLLATYLEKWEKDEEAELVIIKGSGRAFCAGGDLRVFYDGRKIKDACLEVVYRFYWLCYHISTYKKTQVALVHGISMGGGAALMVPLKFSVVTEKTVFATPEASFGFHIDCGFSYYHSRLPGHLGEYLALTGGRLSGKEIVAAGLATHFVPFEKIVELENRLISLNSGDENAVRSVIEEFSSEVKLDEESILNKQSIIKECFSKDSVEEIIKSLEAEANNKGNVWIGAVLKGMKRSSPTALKIALRSVREGRNQTLSECLKKEFRLTMNILRTTISEDMYEGIRALTIDKDNAPKWEPSSLDKVEDGKLDLIFQPFEKNLELQIPESEEYRWDGKYENSAYALPN*
>Glyma08g42070.2 sequence type=predicted peptide gene model=Glyma08g42070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAPSSAVPDEQVVVGEEIEHVRVITLNRPRQLNAISPELVSLLATYLEKWEKDEEAELVIIKGSGRAFCAGGDLRVFYDGRKIKDACLEVVYRFYWLCYHISTYKKTQVALVHGISMGGGAALMVPLKFSVVTEKTVFATPEASFGFHIDCGFSYYHSRLPGHLGEYLALTGGRLSGKEIVAAGLATHFVPFEKIVELENRLISLNSGDENAVRSVIEEFSSEVKLDEESILNKQSIIKECFSKDSVEEIIKSLEAEANNKGNVWIGAVLKGMKRSSPTALKIALRSVREGRNQTLSECLKKEFRLTMNILRTTISEDMYEGIRALTIDKDNAPKWEPSSLDKVEDGKLDLIFQPFEKNLELQIPESEEYRWDGKYENSAYALPN*