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Report for Sequence Feature Glyma08g42070

Feature Type:gene_model
Chromosome:Gm08
Start:41957316
stop:41962735
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G06550AT Annotation by Michelle Graham. TAIR10: ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr1:2003834-2006564 REVERSE LENGTH=387 SoyBaseE_val: 0ISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0080167GO-bp Annotation by Michelle Graham. GO Biological Process: response to karrikin SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0003860GO-mf Annotation by Michelle Graham. GO Molecular Function: 3-hydroxyisobutyryl-CoA hydrolase activity SoyBaseN/AISS
KOG1684 KOG Enoyl-CoA hydratase JGI ISS
PTHR11941Panther ENOYL-COA HYDRATASE-RELATED JGI ISS
PTHR11941:SF19Panther 3-HYDROXYACYL-COA DEHYDROGENASE JGI ISS
PF00378PFAM Enoyl-CoA hydratase/isomerase family JGI ISS
UniRef100_B9SKX9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Enoyl-CoA hydratase, mitochondrial, putative n=1 Tax=Ricinus communis RepID=B9SKX9_RICCO SoyBaseE_val: 0ISS
UniRef100_I1KXZ9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXZ9_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma18g13260 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g307800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g42070.2   sequence type=transcript   gene model=Glyma08g42070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTTATTCTATCTCACTTTCATACTCACCCTTATTGCAGGTTAACTTCAGCCTTATTTTGACCTCAATGGCACCAAGTTCGGCAGTGCCAGATGAACAGGTTGTTGTTGGAGAGGAGATAGAGCATGTAAGAGTGATCACTTTGAACAGGCCAAGGCAATTGAATGCCATCTCACCAGAATTGGTTTCTCTGCTAGCAACATATTTGGAAAAGTGGGAGAAGGATGAGGAAGCAGAGCTAGTTATCATAAAGGGATCTGGTAGGGCTTTTTGCGCTGGAGGGGATTTGAGAGTGTTCTATGACGGCAGGAAAATAAAGGATGCCTGTCTTGAAGTGGTCTACAGATTTTACTGGCTTTGCTATCACATTAGTACCTATAAGAAAACCCAGGTTGCGCTTGTTCATGGAATTTCAATGGGTGGAGGTGCAGCTTTGATGGTCCCATTGAAGTTCTCAGTTGTAACAGAAAAAACTGTTTTTGCCACTCCTGAAGCAAGTTTTGGATTTCATATTGATTGTGGCTTCTCATACTACCACTCTCGTTTACCAGGGCATTTAGGAGAATACTTGGCACTTACTGGAGGAAGGTTGAGTGGGAAGGAAATAGTTGCTGCTGGACTGGCAACCCATTTTGTCCCTTTTGAGAAAATTGTTGAGCTAGAGAACCGCCTTATTAGCTTGAATTCTGGTGATGAGAATGCCGTAAGATCAGTAATTGAAGAATTCTCTTCAGAAGTCAAACTTGATGAAGAGAGTATCTTAAACAAGCAGTCAATAATCAAAGAGTGCTTCTCAAAAGACTCCGTAGAGGAAATTATAAAATCATTAGAAGCAGAAGCAAACAACAAAGGAAATGTATGGATAGGTGCAGTTTTAAAAGGAATGAAAAGATCATCACCAACTGCATTGAAAATAGCATTAAGATCGGTTCGTGAAGGAAGGAATCAAACATTATCTGAATGCTTAAAAAAGGAATTCAGATTAACAATGAATATACTGCGAACTACAATATCTGAGGATATGTATGAGGGTATTAGAGCTCTCACCATTGACAAAGATAATGCTCCAAAGTGGGAACCTTCATCCCTTGACAAAGTAGAGGACGGAAAGTTGGACTTGATCTTTCAGCCATTTGAGAAGAATTTGGAGCTGCAGATTCCAGAAAGTGAGGAATACAGGTGGGATGGTAAATATGAGAATTCAGCTTATGCCCTTCCAAATTGAGAAATTTCAATCTGTTAAATGTTGCCTCTTTTAGAATTCCTCCAAAAATGTCATGGATTTCTCTACTTTCTGGTATGCATTAATCCAGGCTACTGTTCTGAGTTCTTGAATAAACTTCAACATATGAAAGAAGTTCATGAAGAGTCCTCTAAGTTTGTTGTTGCTATTTTGCGGGAAAAAAAATCATGTAATTTCAGATGTTATGAATATAGATGAATTGTGCTGTAAAAGTATAATGCTTCCCCTAGAAAGCACATTAAAATAAGGTTTTTTTTTTTAAGAAAATTATTTC

>Glyma08g42070.1   sequence type=CDS   gene model=Glyma08g42070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCAAGTTCGGCAGTGCCAGATGAACAGGTTGTTGTTGGAGAGGAGATAGAGCATGTAAGAGTGATCACTTTGAACAGGCCAAGGCAATTGAATGCCATCTCACCAGAATTGGTTTCTCTGCTAGCAACATATTTGGAAAAGTGGGAGAAGGATGAGGAAGCAGAGCTAGTTATCATAAAGGGATCTGGTAGGGCTTTTTGCGCTGGAGGGGATTTGAGAGTGTTCTATGACGGCAGGAAAATAAAGGATGCCTGTCTTGAAGTGGTCTACAGATTTTACTGGCTTTGCTATCACATTAGTACCTATAAGAAAACCCAGGTTGCGCTTGTTCATGGAATTTCAATGGGTGGAGGTGCAGCTTTGATGGTCCCATTGAAGTTCTCAGTTGTAACAGAAAAAACTGTTTTTGCCACTCCTGAAGCAAGTTTTGGATTTCATATTGATTGTGGCTTCTCATACTACCACTCTCGTTTACCAGGGCATTTAGGAGAATACTTGGCACTTACTGGAGGAAGGTTGAGTGGGAAGGAAATAGTTGCTGCTGGACTGGCAACCCATTTTGTCCCTTTTGAGAAAATTGTTGAGCTAGAGAACCGCCTTATTAGCTTGAATTCTGGTGATGAGAATGCCGTAAGATCAGTAATTGAAGAATTCTCTTCAGAAGTCAAACTTGATGAAGAGAGTATCTTAAACAAGCAGTCAATAATCAAAGAGTGCTTCTCAAAAGACTCCGTAGAGGAAATTATAAAATCATTAGAAGCAGAAGCAAACAACAAAGGAAATGTATGGATAGGTGCAGTTTTAAAAGGAATGAAAAGATCATCACCAACTGCATTGAAAATAGCATTAAGATCGGTTCGTGAAGGAAGGAATCAAACATTATCTGAATGCTTAAAAAAGGAATTCAGATTAACAATGAATATACTGCGAACTACAATATCTGAGGATATGTATGAGGGTATTAGAGCTCTCACCATTGACAAAGATAATGCTCCAAAGTGGGAACCTTCATCCCTTGACAAAGTAGAGGACGGAAAGTTGGACTTGATCTTTCAGCCATTTGAGAAGAATTTGGAGCTGCAGATTCCAGAAAGTGAGGAATACAGGTGGGATGGTAAATATGAGAATTCAGCTTATGCCCTTCCAAATTGA

>Glyma08g42070.2   sequence type=CDS   gene model=Glyma08g42070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCAAGTTCGGCAGTGCCAGATGAACAGGTTGTTGTTGGAGAGGAGATAGAGCATGTAAGAGTGATCACTTTGAACAGGCCAAGGCAATTGAATGCCATCTCACCAGAATTGGTTTCTCTGCTAGCAACATATTTGGAAAAGTGGGAGAAGGATGAGGAAGCAGAGCTAGTTATCATAAAGGGATCTGGTAGGGCTTTTTGCGCTGGAGGGGATTTGAGAGTGTTCTATGACGGCAGGAAAATAAAGGATGCCTGTCTTGAAGTGGTCTACAGATTTTACTGGCTTTGCTATCACATTAGTACCTATAAGAAAACCCAGGTTGCGCTTGTTCATGGAATTTCAATGGGTGGAGGTGCAGCTTTGATGGTCCCATTGAAGTTCTCAGTTGTAACAGAAAAAACTGTTTTTGCCACTCCTGAAGCAAGTTTTGGATTTCATATTGATTGTGGCTTCTCATACTACCACTCTCGTTTACCAGGGCATTTAGGAGAATACTTGGCACTTACTGGAGGAAGGTTGAGTGGGAAGGAAATAGTTGCTGCTGGACTGGCAACCCATTTTGTCCCTTTTGAGAAAATTGTTGAGCTAGAGAACCGCCTTATTAGCTTGAATTCTGGTGATGAGAATGCCGTAAGATCAGTAATTGAAGAATTCTCTTCAGAAGTCAAACTTGATGAAGAGAGTATCTTAAACAAGCAGTCAATAATCAAAGAGTGCTTCTCAAAAGACTCCGTAGAGGAAATTATAAAATCATTAGAAGCAGAAGCAAACAACAAAGGAAATGTATGGATAGGTGCAGTTTTAAAAGGAATGAAAAGATCATCACCAACTGCATTGAAAATAGCATTAAGATCGGTTCGTGAAGGAAGGAATCAAACATTATCTGAATGCTTAAAAAAGGAATTCAGATTAACAATGAATATACTGCGAACTACAATATCTGAGGATATGTATGAGGGTATTAGAGCTCTCACCATTGACAAAGATAATGCTCCAAAGTGGGAACCTTCATCCCTTGACAAAGTAGAGGACGGAAAGTTGGACTTGATCTTTCAGCCATTTGAGAAGAATTTGGAGCTGCAGATTCCAGAAAGTGAGGAATACAGGTGGGATGGTAAATATGAGAATTCAGCTTATGCCCTTCCAAATTGA

>Glyma08g42070.1   sequence type=predicted peptide   gene model=Glyma08g42070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPSSAVPDEQVVVGEEIEHVRVITLNRPRQLNAISPELVSLLATYLEKWEKDEEAELVIIKGSGRAFCAGGDLRVFYDGRKIKDACLEVVYRFYWLCYHISTYKKTQVALVHGISMGGGAALMVPLKFSVVTEKTVFATPEASFGFHIDCGFSYYHSRLPGHLGEYLALTGGRLSGKEIVAAGLATHFVPFEKIVELENRLISLNSGDENAVRSVIEEFSSEVKLDEESILNKQSIIKECFSKDSVEEIIKSLEAEANNKGNVWIGAVLKGMKRSSPTALKIALRSVREGRNQTLSECLKKEFRLTMNILRTTISEDMYEGIRALTIDKDNAPKWEPSSLDKVEDGKLDLIFQPFEKNLELQIPESEEYRWDGKYENSAYALPN*

>Glyma08g42070.2   sequence type=predicted peptide   gene model=Glyma08g42070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPSSAVPDEQVVVGEEIEHVRVITLNRPRQLNAISPELVSLLATYLEKWEKDEEAELVIIKGSGRAFCAGGDLRVFYDGRKIKDACLEVVYRFYWLCYHISTYKKTQVALVHGISMGGGAALMVPLKFSVVTEKTVFATPEASFGFHIDCGFSYYHSRLPGHLGEYLALTGGRLSGKEIVAAGLATHFVPFEKIVELENRLISLNSGDENAVRSVIEEFSSEVKLDEESILNKQSIIKECFSKDSVEEIIKSLEAEANNKGNVWIGAVLKGMKRSSPTALKIALRSVREGRNQTLSECLKKEFRLTMNILRTTISEDMYEGIRALTIDKDNAPKWEPSSLDKVEDGKLDLIFQPFEKNLELQIPESEEYRWDGKYENSAYALPN*







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