Glyma08g42030 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g42030

Feature Type:	gene_model
Chromosome:	Gm08
Start:	41906455
stop:	41909292
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g42030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G60900	AT	Annotation by Michelle Graham. TAIR10: receptor-like protein kinase 1 \| chr5:24498467-24501494 REVERSE LENGTH=748	SoyBase	E_val: 1.00E-136	ISS
GO:0000165	GO-bp	Annotation by Michelle Graham. GO Biological Process: MAPK cascade	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010310	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0035304	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF00954	PFAM	S-locus glycoprotein family	JGI		ISS
PF01453	PFAM	D-mannose binding lectin	JGI		ISS
UniRef100_G7ID64	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Amine oxidase n=1 Tax=Medicago truncatula RepID=G7ID64_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KXZ5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KXZ5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g42030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g42030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g307400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g42030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g42030

Limit To All Plant Sequences

>Glyma08g42030.2   sequence type=transcript   gene model=Glyma08g42030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATTAATCCTGTGTTGGATTCCAAAAGTCTTCCACTGCACAGTTACCAAGAAATTTCCAAGCCAATTATTTATGATGTTCGTTGAGCATATGCAGCATTGTGGCTGGCACCAATAATTCATCTTGGAGATCATCAAATGGTGATTATGCCTTTGGCTTCTACCACCTTCTTAGTGGCCACTATCTTGTTGGAATTTGGTTTGACAAGGTTCCAAACAAAACACTGGTTTGGTCAGCAAATCGCGACAATCCGGTTGAAATTGGATCAACCATCAATCTCACATCAAGTGGCGAATTTCTGCTCCAACCTGTCAAAGGGGCTACATTTCAAATCTACAAAGGAACAAACACTCCTGCTGCAACTGCAAAAATGGAGGATAATGGGAATTTGGTGTTGAGGAATTCACTTTCTGAATTTATATGGCAGAGCTTTGATTCTCCCACGGATACTCTTCTATTAGGCCAAACTTTGAAGATGGGTCAGAAGCTCTATTCCAATGCCAATGGATCAGTGGACTACTCAAAAGGGCAATACAGTTTGGAGATCCAACAATCTGATGGAAACATTGTTCTCAAAGCTTTTCGGTTCACCGATGCTGGTTATTGGTCCAGTGGAACTAACCAAAACACAGATGTGAGAATTGTTTTCAACAGCACAACAGCTTTTCTTTACGCGGTCAATGGAACCAACCAAACCATCCATAACATGACAGTCGATCCTTTAACGGGCGCGATCGAAGACTATTATCATCGCGTGCTGATCGATGATCGGGGAAACTTGCAGAAGTTGATTCACCCAAAAGAAAATGGAAGCGATTGGACATCTGTCTGGAACGCCATAGAACTGCCCTGCAGAGTGACCGCGCTTTGTGGGGTGTATGGCTTTTGCAATTCATCTGACAACCAATCATATAGCTGTGAATGCTTGCCTGGCTATACACATTTGGATCCAAATGTACCTTCCAAAGGGTGTTATCTTAGTACGGAGGCCAATGGCTTGTGTGCTGCAAATTCCTCTAAGGTTGAAGTGAAAGCAATTCAAGATGCTGATATACCAAATAATGATTATTTTTATTTTGATCTACAAGTTATAAACAACATGGATCTGGAAAGTTGCAAGAGGGAACTGATGGATGACTGTCTCTGCATGGCTGCTGTTTTTTATGGCTCAGATTGCCACAAGAAAACGTGGCCAGTTATAAACGCCATAAAAATCTTCCCTGACACTAGCAATCGGGTGATGCTGATTAAAGTTCCTCTTCTTGACAATGATATGGAAAATGAAAAGGATTCACAATCTTTGGTTGTTTTGATAGTGGCTCTTGTCTCTTGTTCCCTACTTGCTGTATTGTTTGCTGCTACTTTTATTTATCATCACCCCATCATTTGTCAACATCTCATACACAAAGGGGAGCCACCAAAGCCAAAGCCTATGGATATCAACCTAAAGGCATTCTCATTCCAACAGCTGAGAGAAGCAACAAATGGATTCAAGGACAAACTCGGTCGAGGTGCCTATGGTACAGTGTATAGCGGGGTTCTAAACTTGGAGGGTCAACAGGTTGAGGTTGCGGTCAAACAACTGGAGCAAGTAGAAGAGCAAGGTGAGAAAGAATTTGTTACAGAAGTTCAAGTTATTGCTCATACTCATCATAGAAATCTCGTTGGGCTATTGGGCTATTGCAATGAACAAAATCACAGGCTTTTGGTTTATGAGAAAATGGAAAATGGGACACTCTCCAACTTTCTTTTTGGAGAAGGGAATCATAGACCCAGTTGGGAGAGTAGAGTAAGAATTGTGATTGAGATTGCAAGAGGCTTATTGTATCTGCATGAGGAGTGTGACCAACAAATCATTCATTGCGACATAAAGCCTCAGAATGTTCTTCTCGACTCGAGTTACACCGCAAAGATTTCAGATTTTGGACTGGCAAAGCTTCTAATGAAAGACAAGACTCGAACAAGCACCAATGCTAGAGGAACAGTGGGTTATATGGCACCAGAATGGCTAAAAAATGCACCTGTTACTACAAAGGTTGATATCTACAGCTTTGGCGTTGTGTTGTTGGAAACCATATTTTGCAGAAGGCACATCGAGTTACACCGAATCAATGACGAAACAACGGGTGGTGATGACATGATACTCATAGATTGGGTTCTGTATCTGGCAAAAGAAAACAGTTTAAGAGCAGCTGTGGTTGATGATCTTGAAGTTGAAAGTGATTTCAAACGGTTTGAAAGAATGGTAATGGTTGGATTGTGGTGCGTATATCCGAATTCAACTCTTCGACCATCTATGAAAGTGGTGGCACAGATGTTGGAAGGAAATATAGAAGTGGGTGTTCCCCCACTCAACTAAGTAATGATTCACCTTATGTCATTTAAAATAAATAAATAAAATCCTATTTTTTAGTTTTTCCTAGATGCAATTTTGTAACAAAACTTAATTTCGTTAAACAAACCTAGTATAATTTGTTTTCTTGTATAATCACGTTTAAATACTTATAAGTGTTAAGCGTGGGTTTGGTCGAGATTCCTGTTTTTCAGCAAAGAGAAA

Coding sequences of Glyma08g42030

Limit To All Plant Sequences

>Glyma08g42030.1   sequence type=CDS   gene model=Glyma08g42030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTACAAAACCCCTTGTTCTCTTTGTTTCTTTCTTTCTATGTTCCAGTGTTCTAAGAAATGCTAACTCAATTGAACTAGGTTCCAGCATTGTGGCTGGCACCAATAATTCATCTTGGAGATCATCAAATGGTGATTATGCCTTTGGCTTCTACCACCTTCTTAGTGGCCACTATCTTGTTGGAATTTGGTTTGACAAGGTTCCAAACAAAACACTGGTTTGGTCAGCAAATCGCGACAATCCGGTTGAAATTGGATCAACCATCAATCTCACATCAAGTGGCGAATTTCTGCTCCAACCTGTCAAAGGGGCTACATTTCAAATCTACAAAGGAACAAACACTCCTGCTGCAACTGCAAAAATGGAGGATAATGGGAATTTGGTGTTGAGGAATTCACTTTCTGAATTTATATGGCAGAGCTTTGATTCTCCCACGGATACTCTTCTATTAGGCCAAACTTTGAAGATGGGTCAGAAGCTCTATTCCAATGCCAATGGATCAGTGGACTACTCAAAAGGGCAATACAGTTTGGAGATCCAACAATCTGATGGAAACATTGTTCTCAAAGCTTTTCGGTTCACCGATGCTGGTTATTGGTCCAGTGGAACTAACCAAAACACAGATGTGAGAATTGTTTTCAACAGCACAACAGCTTTTCTTTACGCGGTCAATGGAACCAACCAAACCATCCATAACATGACAGTCGATCCTTTAACGGGCGCGATCGAAGACTATTATCATCGCGTGCTGATCGATGATCGGGGAAACTTGCAGAAGTTGATTCACCCAAAAGAAAATGGAAGCGATTGGACATCTGTCTGGAACGCCATAGAACTGCCCTGCAGAGTGACCGCGCTTTGTGGGGTGTATGGCTTTTGCAATTCATCTGACAACCAATCATATAGCTGTGAATGCTTGCCTGGCTATACACATTTGGATCCAAATGTACCTTCCAAAGGGTGTTATCTTAGTACGGAGGCCAATGGCTTGTGTGCTGCAAATTCCTCTAAGGTTGAAGTGAAAGCAATTCAAGATGCTGATATACCAAATAATGATTATTTTTATTTTGATCTACAAGTTATAAACAACATGGATCTGGAAAGTTGCAAGAGGGAACTGATGGATGACTGTCTCTGCATGGCTGCTGTTTTTTATGGCTCAGATTGCCACAAGAAAACGTGGCCAGTTATAAACGCCATAAAAATCTTCCCTGACACTAGCAATCGGGTGATGCTGATTAAAGTTCCTCTTCTTGACAATGATATGGAAAATGAAAAGGATTCACAATCTTTGGTTGTTTTGATAGTGGCTCTTGTCTCTTGTTCCCTACTTGCTGTATTGTTTGCTGCTACTTTTATTTATCATCACCCCATCATTTGTCAACATCTCATACACAAAGGGGAGCCACCAAAGCCAAAGCCTATGGATATCAACCTAAAGGCATTCTCATTCCAACAGCTGAGAGAAGCAACAAATGGATTCAAGGACAAACTCGGTCGAGGTGCCTATGGTACAGTGTATAGCGGGGTTCTAAACTTGGAGGGTCAACAGGTTGAGGTTGCGGTCAAACAACTGGAGCAAGTAGAAGAGCAAGGTGAGAAAGAATTTGTTACAGAAGTTCAAGTTATTGCTCATACTCATCATAGAAATCTCGTTGGGCTATTGGGCTATTGCAATGAACAAAATCACAGGCTTTTGGTTTATGAGAAAATGGAAAATGGGACACTCTCCAACTTTCTTTTTGGAGAAGGGAATCATAGACCCAGTTGGGAGAGTAGAGTAAGAATTGTGATTGAGATTGCAAGAGGCTTATTGTATCTGCATGAGGAGTGTGACCAACAAATCATTCATTGCGACATAAAGCCTCAGAATGTTCTTCTCGACTCGAGTTACACCGCAAAGATTTCAGATTTTGGACTGGCAAAGCTTCTAATGAAAGACAAGACTCGAACAAGCACCAATGCTAGAGGAACAGTGGGTTATATGGCACCAGAATGGCTAAAAAATGCACCTGTTACTACAAAGGTTGATATCTACAGCTTTGGCGTTGTGTTGTTGGAAACCATATTTTGCAGAAGGCACATCGAGTTACACCGAATCAATGACGAAACAACGGGTGGTGATGACATGATACTCATAGATTGGGTTCTGTATCTGGCAAAAGAAAACAGTTTAAGAGCAGCTGTGGTTGATGATCTTGAAGTTGAAAGTGATTTCAAACGGTTTGAAAGAATGGTAATGGTTGGATTGTGGTGCGTATATCCGAATTCAACTCTTCGACCATCTATGAAAGTGGTGGCACAGATGTTGGAAGGAAATATAGAAGTGGGTGTTCCCCCACTCAACTAA

>Glyma08g42030.2   sequence type=CDS   gene model=Glyma08g42030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGATAATGGGAATTTGGTGTTGAGGAATTCACTTTCTGAATTTATATGGCAGAGCTTTGATTCTCCCACGGATACTCTTCTATTAGGCCAAACTTTGAAGATGGGTCAGAAGCTCTATTCCAATGCCAATGGATCAGTGGACTACTCAAAAGGGCAATACAGTTTGGAGATCCAACAATCTGATGGAAACATTGTTCTCAAAGCTTTTCGGTTCACCGATGCTGGTTATTGGTCCAGTGGAACTAACCAAAACACAGATGTGAGAATTGTTTTCAACAGCACAACAGCTTTTCTTTACGCGGTCAATGGAACCAACCAAACCATCCATAACATGACAGTCGATCCTTTAACGGGCGCGATCGAAGACTATTATCATCGCGTGCTGATCGATGATCGGGGAAACTTGCAGAAGTTGATTCACCCAAAAGAAAATGGAAGCGATTGGACATCTGTCTGGAACGCCATAGAACTGCCCTGCAGAGTGACCGCGCTTTGTGGGGTGTATGGCTTTTGCAATTCATCTGACAACCAATCATATAGCTGTGAATGCTTGCCTGGCTATACACATTTGGATCCAAATGTACCTTCCAAAGGGTGTTATCTTAGTACGGAGGCCAATGGCTTGTGTGCTGCAAATTCCTCTAAGGTTGAAGTGAAAGCAATTCAAGATGCTGATATACCAAATAATGATTATTTTTATTTTGATCTACAAGTTATAAACAACATGGATCTGGAAAGTTGCAAGAGGGAACTGATGGATGACTGTCTCTGCATGGCTGCTGTTTTTTATGGCTCAGATTGCCACAAGAAAACGTGGCCAGTTATAAACGCCATAAAAATCTTCCCTGACACTAGCAATCGGGTGATGCTGATTAAAGTTCCTCTTCTTGACAATGATATGGAAAATGAAAAGGATTCACAATCTTTGGTTGTTTTGATAGTGGCTCTTGTCTCTTGTTCCCTACTTGCTGTATTGTTTGCTGCTACTTTTATTTATCATCACCCCATCATTTGTCAACATCTCATACACAAAGGGGAGCCACCAAAGCCAAAGCCTATGGATATCAACCTAAAGGCATTCTCATTCCAACAGCTGAGAGAAGCAACAAATGGATTCAAGGACAAACTCGGTCGAGGTGCCTATGGTACAGTGTATAGCGGGGTTCTAAACTTGGAGGGTCAACAGGTTGAGGTTGCGGTCAAACAACTGGAGCAAGTAGAAGAGCAAGGTGAGAAAGAATTTGTTACAGAAGTTCAAGTTATTGCTCATACTCATCATAGAAATCTCGTTGGGCTATTGGGCTATTGCAATGAACAAAATCACAGGCTTTTGGTTTATGAGAAAATGGAAAATGGGACACTCTCCAACTTTCTTTTTGGAGAAGGGAATCATAGACCCAGTTGGGAGAGTAGAGTAAGAATTGTGATTGAGATTGCAAGAGGCTTATTGTATCTGCATGAGGAGTGTGACCAACAAATCATTCATTGCGACATAAAGCCTCAGAATGTTCTTCTCGACTCGAGTTACACCGCAAAGATTTCAGATTTTGGACTGGCAAAGCTTCTAATGAAAGACAAGACTCGAACAAGCACCAATGCTAGAGGAACAGTGGGTTATATGGCACCAGAATGGCTAAAAAATGCACCTGTTACTACAAAGGTTGATATCTACAGCTTTGGCGTTGTGTTGTTGGAAACCATATTTTGCAGAAGGCACATCGAGTTACACCGAATCAATGACGAAACAACGGGTGGTGATGACATGATACTCATAGATTGGGTTCTGTATCTGGCAAAAGAAAACAGTTTAAGAGCAGCTGTGGTTGATGATCTTGAAGTTGAAAGTGATTTCAAACGGTTTGAAAGAATGGTAATGGTTGGATTGTGGTGCGTATATCCGAATTCAACTCTTCGACCATCTATGAAAGTGGTGGCACAGATGTTGGAAGGAAATATAGAAGTGGGTGTTCCCCCACTCAACTAA

Predicted protein sequences of Glyma08g42030

Limit To All Plant Sequences

>Glyma08g42030.1   sequence type=predicted peptide   gene model=Glyma08g42030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVTKPLVLFVSFFLCSSVLRNANSIELGSSIVAGTNNSSWRSSNGDYAFGFYHLLSGHYLVGIWFDKVPNKTLVWSANRDNPVEIGSTINLTSSGEFLLQPVKGATFQIYKGTNTPAATAKMEDNGNLVLRNSLSEFIWQSFDSPTDTLLLGQTLKMGQKLYSNANGSVDYSKGQYSLEIQQSDGNIVLKAFRFTDAGYWSSGTNQNTDVRIVFNSTTAFLYAVNGTNQTIHNMTVDPLTGAIEDYYHRVLIDDRGNLQKLIHPKENGSDWTSVWNAIELPCRVTALCGVYGFCNSSDNQSYSCECLPGYTHLDPNVPSKGCYLSTEANGLCAANSSKVEVKAIQDADIPNNDYFYFDLQVINNMDLESCKRELMDDCLCMAAVFYGSDCHKKTWPVINAIKIFPDTSNRVMLIKVPLLDNDMENEKDSQSLVVLIVALVSCSLLAVLFAATFIYHHPIICQHLIHKGEPPKPKPMDINLKAFSFQQLREATNGFKDKLGRGAYGTVYSGVLNLEGQQVEVAVKQLEQVEEQGEKEFVTEVQVIAHTHHRNLVGLLGYCNEQNHRLLVYEKMENGTLSNFLFGEGNHRPSWESRVRIVIEIARGLLYLHEECDQQIIHCDIKPQNVLLDSSYTAKISDFGLAKLLMKDKTRTSTNARGTVGYMAPEWLKNAPVTTKVDIYSFGVVLLETIFCRRHIELHRINDETTGGDDMILIDWVLYLAKENSLRAAVVDDLEVESDFKRFERMVMVGLWCVYPNSTLRPSMKVVAQMLEGNIEVGVPPLN*

>Glyma08g42030.2   sequence type=predicted peptide   gene model=Glyma08g42030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDNGNLVLRNSLSEFIWQSFDSPTDTLLLGQTLKMGQKLYSNANGSVDYSKGQYSLEIQQSDGNIVLKAFRFTDAGYWSSGTNQNTDVRIVFNSTTAFLYAVNGTNQTIHNMTVDPLTGAIEDYYHRVLIDDRGNLQKLIHPKENGSDWTSVWNAIELPCRVTALCGVYGFCNSSDNQSYSCECLPGYTHLDPNVPSKGCYLSTEANGLCAANSSKVEVKAIQDADIPNNDYFYFDLQVINNMDLESCKRELMDDCLCMAAVFYGSDCHKKTWPVINAIKIFPDTSNRVMLIKVPLLDNDMENEKDSQSLVVLIVALVSCSLLAVLFAATFIYHHPIICQHLIHKGEPPKPKPMDINLKAFSFQQLREATNGFKDKLGRGAYGTVYSGVLNLEGQQVEVAVKQLEQVEEQGEKEFVTEVQVIAHTHHRNLVGLLGYCNEQNHRLLVYEKMENGTLSNFLFGEGNHRPSWESRVRIVIEIARGLLYLHEECDQQIIHCDIKPQNVLLDSSYTAKISDFGLAKLLMKDKTRTSTNARGTVGYMAPEWLKNAPVTTKVDIYSFGVVLLETIFCRRHIELHRINDETTGGDDMILIDWVLYLAKENSLRAAVVDDLEVESDFKRFERMVMVGLWCVYPNSTLRPSMKVVAQMLEGNIEVGVPPLN*

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