SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G60900 | AT | Annotation by Michelle Graham. TAIR10: receptor-like protein kinase 1 | chr5:24498467-24501494 REVERSE LENGTH=748 | SoyBase | E_val: 1.00E-69 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0035304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0004713 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| GO:0030246 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding | SoyBase | N/A | ISS |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24420:SF846 | Panther | JGI | ISS | ||
| PF00954 | PFAM | S-locus glycoprotein family | JGI | ISS | |
| PF01453 | PFAM | D-mannose binding lectin | JGI | ISS | |
| PF07714 | PFAM | Protein tyrosine kinase | JGI | ISS | |
| UniRef100_G7K2D3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-rich receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7K2D3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KXZ4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXZ4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g42020 not represented in the dataset |
Glyma08g42020 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g13456 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g307300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g42020.2 sequence type=CDS gene model=Glyma08g42020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTTCAGCTATCTTTCTTCCTTTCATACTTTCACTTTCACTTTCACTTTCACTTCTGAATGGCTTAGATGTCATACAATTAAACACAAACATCACTGCCGGTTCAAATTCTACCTGGAAGTCACCCTCGGGCGATTTTGAATTCGGATTCTATGATCTTCGCACTGGTCTCTTTCTTGTGGGAATATGGTTTGGAAAAATCCCAGACAGAACTTTGGCATGGTACTTCCAGAGTCCCCCTGTGGAAGCAAATTCCCAAATCCAATTCACTTCTGCAGGAAACCTTGTGGTTGCATACCCGAACCAGACTATTGCTCAAACCATATACAGTGGTGGTGCTGCAACTTCTTCCTACATGCAAGATGACGGAAATTTTGTCATGAAGGACTCCAACTCGGAATCTGTCTGGCAGAGTTTCAATTCTCCTTCCAACACAATGTTACCGGGACAAACGTTGCAGAGTACCAAAGTTCTCTATTCCAAGGAGAGAGGAGATTCAAACTACTCATTGGGAAAATTCATGTTACAAATGCAAGACGATGGAAACTTGGTGCTAAAAGCGTACCAATGGTCTGGCCCTGCATACTGGTACAATTCAACCAACACCCCCAATGTGAATTTGGAGTTTAATGCTACCAGTGCTCTCATGCACTTTGTTAGCGGCTCTAGGAGCATCTACACCTTAACAAAAAGCACTTCAACCCCCGTGGAAGATTACTATCACCGCGCTACAATAGATGAGAATGGAAATTTTCAGCAATATGCATATCCCAGACGAAACGAGAATGACACCACTGGGTGGAGGAGGGTTTGGAGAGCTGTGGAAGATCCCTGCAGAGTGAATCTTGTTTGTGGTGTTTATGGTTTGTGCACTTCTCCTGACAATGAATCAGTCAAGTGTGAGTGTATTCCGGGTTATATCCCATTGGATCATCAAGATGTGTCCAAAGGGTGTCACCCACCAGATACAATCAATTACTGTGCAGAGAAGAAGTTCAAGGTAGAGGTGTTTGGGGACACTGATTTCCAATTCGATAATAATTTTGTTCGCGTATATGATGTTGATTTGGAAGGTTGTAAGAAGTCTTTAATGGATGATTGTAATGTCATTGCTGCAACTTATAACACCTCCACCCGCACATGTGCCAAGAAGAGGTTGCCTTTGCTGAATGCTAGAAATAGCTCTTCTTCGAAGGGACAGAAAGCACTGCTTAAAGTTCCTAACAGTGTTGATGATGGGAGATCTAATAAAGCTACCAACAAAAAGAGCTTTAATGTAAGAATATTTTTGAAGGTTATGCTTGCAGTTACTGCCACTCTTGCATGTTTCTTTGGTGCCCTTGTTGTCTACTATCACCCTTTCACTCAGAGACTAGCAAGAAGAAAGCGGTATTTGAATGCAAGCGCTATTGGAATCAACTTCAGAGAATTCACCTTCCAGGAGCTGCATGAAGCAACAGATGGATTCACTAGGATTCTTGGAAGGGGTTCTTCGGGTAAAGTCTATCACGGAACTTTAATAATAGACGATGCAGTGATTGGTATTGCAGTAAAGAAACTGGAAAAGAAAATTGAGAAAAGTGAGAGTGAATTCATGACTGAGCTCAAAATTATTGGCCGTACCCATCACAGAAATTTGGTGAGGCTTTTGGGCTTTTGCATTGAGAGTAGCCATCGAGTTCTTGTGTATGAGTTGATGACGAACGGAGCATTGTCAAGCTTTTTGTTTGGAGAGGGAGAAAGGCCTCAATGGGGTCAGAGGATCGAAATGGCTCTTGGAGTCGCACGAGGCTTACTATACCTGCACGAAGAGAGTGTGGTGTCTAGGAAGCTAGAGGTAGTGGTGAGACACGACTCAGAAGTGCTGAATGATTTCAAGAGGTTTGAAGAAATGGCATTGGTTGGACTATGGTGTGTTCATCCGAATCCGGCTCTTAGACCTTCAATGAAGCATGTGATGCAGATGCTAAATGGAACTGTGGAAGTTGGGATTCCTCCTTTGGTTTATGATCAGATGATGGAAGATCAGGGCTTGTAG
>Glyma08g42020.2 sequence type=predicted peptide gene model=Glyma08g42020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSAIFLPFILSLSLSLSLLNGLDVIQLNTNITAGSNSTWKSPSGDFEFGFYDLRTGLFLVGIWFGKIPDRTLAWYFQSPPVEANSQIQFTSAGNLVVAYPNQTIAQTIYSGGAATSSYMQDDGNFVMKDSNSESVWQSFNSPSNTMLPGQTLQSTKVLYSKERGDSNYSLGKFMLQMQDDGNLVLKAYQWSGPAYWYNSTNTPNVNLEFNATSALMHFVSGSRSIYTLTKSTSTPVEDYYHRATIDENGNFQQYAYPRRNENDTTGWRRVWRAVEDPCRVNLVCGVYGLCTSPDNESVKCECIPGYIPLDHQDVSKGCHPPDTINYCAEKKFKVEVFGDTDFQFDNNFVRVYDVDLEGCKKSLMDDCNVIAATYNTSTRTCAKKRLPLLNARNSSSSKGQKALLKVPNSVDDGRSNKATNKKSFNVRIFLKVMLAVTATLACFFGALVVYYHPFTQRLARRKRYLNASAIGINFREFTFQELHEATDGFTRILGRGSSGKVYHGTLIIDDAVIGIAVKKLEKKIEKSESEFMTELKIIGRTHHRNLVRLLGFCIESSHRVLVYELMTNGALSSFLFGEGERPQWGQRIEMALGVARGLLYLHEESVVSRKLEVVVRHDSEVLNDFKRFEEMALVGLWCVHPNPALRPSMKHVMQMLNGTVEVGIPPLVYDQMMEDQGL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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