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Report for Sequence Feature Glyma08g41960

Feature Type:gene_model
Chromosome:Gm08
Start:41842056
stop:41843933
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g41960
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G30860AT Annotation by Michelle Graham. TAIR10: glutathione S-transferase PHI 9 | chr2:13139132-13140057 FORWARD LENGTH=215 SoyBaseE_val: 4.00E-102ISS
GO:0006546GO-bp Annotation by Michelle Graham. GO Biological Process: glycine catabolic process SoyBaseN/AISS
GO:0006569GO-bp Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process SoyBaseN/AISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0006970GO-bp Annotation by Michelle Graham. GO Biological Process: response to osmotic stress SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009684GO-bp Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process SoyBaseN/AISS
GO:0010043GO-bp Annotation by Michelle Graham. GO Biological Process: response to zinc ion SoyBaseN/AISS
GO:0031347GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of defense response SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0004364GO-mf Annotation by Michelle Graham. GO Molecular Function: glutathione transferase activity SoyBaseN/AISS
GO:0004602GO-mf Annotation by Michelle Graham. GO Molecular Function: glutathione peroxidase activity SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0043295GO-mf Annotation by Michelle Graham. GO Molecular Function: glutathione binding SoyBaseN/AISS
KOG0867 KOG Glutathione S-transferase JGI ISS
PTHR11260Panther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING JGI ISS
PTHR11260:SF55Panther SUBFAMILY NOT NAMED JGI ISS
PF00043PFAM Glutathione S-transferase, C-terminal domain JGI ISS
PF02798PFAM Glutathione S-transferase, N-terminal domain JGI ISS
UniRef100_C6SVD7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6SVD7_SOYBN SoyBaseE_val: 2.00E-155ISS
UniRef100_Q06FE1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glutathione S-transferase (Fragment) n=1 Tax=Pyrus communis RepID=Q06FE1_PYRCO SoyBaseE_val: 2.00E-117ISS

Expression Patterns of Glyma08g41960
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g41960
ParalogEvidenceComments
Glyma18g13630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g41960 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g306800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g41960
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g41960
>Glyma08g41960.1   sequence type=CDS   gene model=Glyma08g41960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGTGAAGGTGTATGGTCCAACCTATGGATCCCCCAAGAGGGTCCTGGTGTGTCTGATTGAGAAGGAAATTGAGTTTGAAACAGTGCATGTTGATCTCTTCAAGGGAGAGAATAAGGAACCTGAGTTCCTTAAGCTGCAGCCATTTGGATCCCTTCCTGTTATTCAAGACGGTGATTATACTCTCTATGAATCTCGTGCAATAATCAGATACTTAGCTGAGAAGTATAAAGACCAAGGGACTGACTTATTGGGAAAGACAATAGAAGAAAAGGGTCTAGTGGAACAATGGCTTGAAGTGGAAGCTCATAACTTTCACCCACCACTCTACAACTTGGTTATTAATGTTCTGTTTGCGCCATTAACGGGGGCTCCTTCGGACCAAAAAGTGATAGAAGAAAGTGATAAAAAGATTGAGAAGGTGCTGGATGTTTATGAGGAGAGGCTGTCAAAGAGCAAGTACTTGGCTGGTGACTTCTTCAGCCTTGCTGATCTTAGCCACCTCCCATTTGGTCACTATTTGGTGAACCAAACCGGGAGAGGAAATTTGGTCAGAGACAGGAAGCATGTGAGTGCTTGGTGGGATGATATTAGTAACAGACCTGCTTGGCAGAAGGTTCTTCAGCTATATAAATACCCTGTCTAG
Predicted protein sequences of Glyma08g41960
>Glyma08g41960.1   sequence type=predicted peptide   gene model=Glyma08g41960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVKVYGPTYGSPKRVLVCLIEKEIEFETVHVDLFKGENKEPEFLKLQPFGSLPVIQDGDYTLYESRAIIRYLAEKYKDQGTDLLGKTIEEKGLVEQWLEVEAHNFHPPLYNLVINVLFAPLTGAPSDQKVIEESDKKIEKVLDVYEERLSKSKYLAGDFFSLADLSHLPFGHYLVNQTGRGNLVRDRKHVSAWWDDISNRPAWQKVLQLYKYPV*






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