Glyma08g41900 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g41900

Feature Type:	gene_model
Chromosome:	Gm08
Start:	41797328
stop:	41802868
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g41900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G78990	AT	Annotation by Michelle Graham. TAIR10: HXXXD-type acyl-transferase family protein \| chr1:29713531-29714969 REVERSE LENGTH=455	SoyBase	E_val: 2.00E-153	ISS
GO:0009734	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway	SoyBase	N/A	ISS
GO:0009736	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0016747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups	SoyBase	N/A	ISS
PF02458	PFAM	Transferase family	JGI		ISS
UniRef100_G7K3A2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acetyltransferase, putative n=1 Tax=Medicago truncatula RepID=G7K3A2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KXY5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KXY5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g41900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g41900

Paralog	Evidence	Comments
Glyma18g13690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g41900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g306300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g41900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g41900

Limit To All Plant Sequences

>Glyma08g41900.2   sequence type=CDS   gene model=Glyma08g41900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTTGAGAATGGAAATTTCTCCGTAAATGTGACCAATGAAGAGGTGGTGGCAGCAGTAGTACCAATGCAAGAATATTGGCTCCCACTTTCTAACCTTGACCTACTTCTACCTCCACTTGATGTAGGAGTCTTCTTTTGCTACAAAAATCCCATGCTCAAATCCACAACCTTAGGGAATAGTGGCACCAACAAAATGACCTTTGGATCTATGGTGAGGTCTCTTAAAAATGCCTTGGCACAAACTCTAGTCTCTTATTATGTATTTGCAGGTGAAGTTGTGCCTAATAATATGGGTGAACCCGAGGTGCTTTGTAATAATCGTGGAGTTGATTTTGTTGAAGCTGAGGCAGATGTGGAGCTAAAGTGCCTCAACTTTTACAACCCAGATGACACCATTGAAGGAAAGTTTGTTACTAAGAAGAAGAATGGTGTGCTTGCTGTCCAGGCAACTTCACTCAAGTGTGGTGGAATAATTGTGGCATGCACATTTGACCATCGCGTAGCAGATGCTTATTCCACAAACATGTTCCTTGTTTCATGGGCCGATATGGCCCAGCCCACCAAGCCCAACAACACCCTCGTCGTCACTGTCGCCCCAACCGCTTCTCGCCACCCATGTTTCCGCCGCTCCCTCCTTAGTCCTCGGCGTCCAGGTTCCATTCACCCTTCCCTACACCACATGTACACCCCCATCTCCGAGCTTCCTCCTCCTCCATCCATCGCCTCCGCCGCTCTCCTCAGCCGCATATACTACGTCACGGCGGAGCAGCTCCACCTCATGCAAGTCTTCGCCGCCACACGCACAAAGCTCGAGTGTTTCTCCGCATTCTTGTGGAAGATGGTTGCACGTGCGGCTTCGAAAGAGAAAAATGGTAAAAGGGTTGTGGCCAAAATGGGCATTGTGGTTGATGGAAGGAAAAGGCTTGGCAATGGTGACAAAGAGAGTGAAGCAATGATGGAGAGTTATTTTGGGAATGTGCTTTCCATACCCTTTGGCGGGAAACCGGTGGAGGAGTTGGTAGAGGAGCCGCTAGGGTTTTTGGCGGAAGCCGTTCACGAGTTTTTGGCGGCCGCCACAACTGAGGAGCACTTCTTAGGGCTAATTGATTGGGTGGAGGCTCACCGGCCGGTTCCTGGTATAACTAAAATTTATTGTAACAACGCCGACGATGGACCGGCCTTTGTGGTGTCCTCCGGACAAAGATTTCCGGAGGACAAAGTGGATTTTGGGTGGGGGAAGGTTGTGTTTGCCTCATACCATTTTCCTTGGGGTGGTGAAACTGGTTATGTTATGCCAATGCCAAGTCCTTTGAGAAATGGTGATTGGATTCACTACTACAAAAAGCCTTTTTTAAGACACGCACTTTACGTCGGTTGTATAAGGAACCGCTTTAATAAGTGGTGCGGTGGCATTTTTGAAATTATTGGCTTGCAAATGGCATTTTAG

Predicted protein sequences of Glyma08g41900

Limit To All Plant Sequences

>Glyma08g41900.2   sequence type=predicted peptide   gene model=Glyma08g41900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVENGNFSVNVTNEEVVAAVVPMQEYWLPLSNLDLLLPPLDVGVFFCYKNPMLKSTTLGNSGTNKMTFGSMVRSLKNALAQTLVSYYVFAGEVVPNNMGEPEVLCNNRGVDFVEAEADVELKCLNFYNPDDTIEGKFVTKKKNGVLAVQATSLKCGGIIVACTFDHRVADAYSTNMFLVSWADMAQPTKPNNTLVVTVAPTASRHPCFRRSLLSPRRPGSIHPSLHHMYTPISELPPPPSIASAALLSRIYYVTAEQLHLMQVFAATRTKLECFSAFLWKMVARAASKEKNGKRVVAKMGIVVDGRKRLGNGDKESEAMMESYFGNVLSIPFGGKPVEELVEEPLGFLAEAVHEFLAAATTEEHFLGLIDWVEAHRPVPGITKIYCNNADDGPAFVVSSGQRFPEDKVDFGWGKVVFASYHFPWGGETGYVMPMPSPLRNGDWIHYYKKPFLRHALYVGCIRNRFNKWCGGIFEIIGLQMAF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain