Glyma08g41890 - SoyBase

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Report for Sequence Feature Glyma08g41890

Feature Type:	gene_model
Chromosome:	Gm08
Start:	41781250
stop:	41784970
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g41890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G17230	AT	Annotation by Michelle Graham. TAIR10: PHYTOENE SYNTHASE \| chr5:5659839-5662087 REVERSE LENGTH=422	SoyBase	E_val: 0	ISS
GO:0006636	GO-bp	Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0006655	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0015995	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process	SoyBase	N/A	ISS
GO:0016117	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0010287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0016765	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups	SoyBase	N/A	ISS
GO:0016767	GO-mf	Annotation by Michelle Graham. GO Molecular Function: geranylgeranyl-diphosphate geranylgeranyltransferase activity	SoyBase	N/A	ISS
GO:0046905	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phytoene synthase activity	SoyBase	N/A	ISS
KOG1459	KOG	Squalene synthetase	JGI		ISS
PF00494	PFAM	Squalene/phytoene synthase	JGI		ISS
UniRef100_C5I849	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phytoene synthase protein n=1 Tax=Fragaria x ananassa RepID=C5I849_FRAAN	SoyBase	E_val: 0	ISS
UniRef100_UPI00023389D9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023389D9 related cluster n=1 Tax=unknown RepID=UPI00023389D9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g41890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g41890

Paralog	Evidence	Comments
Glyma18g13700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g41890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g306200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g41890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g41890

Limit To All Plant Sequences

>Glyma08g41890.2   sequence type=CDS   gene model=Glyma08g41890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGTGTTCTTCTTTGGGTGAGTTGTGGACCCAAGGAGAACCCTATCTCCATTGTTGGTCTTGGCGGGAGAGGTGGCAGAAGCCAGAGGAGGTTTGGACTGTGCAATGGGATCAGTTTTGCAAGCTTTTCACCAGCAGTGGCAGACCCTTCAAGATCCTCAGAGGAGAGGGTATATGAAGTGGTGTTGAAACAAGCAGCACTGGTCAAGGAGCAGGACAAGGGTACAAAGAGAGCACTGAATTTGGACAAACCAACAATTGAAGGTGATTTAACCAATGGGGATCTGTTGAGTGATGCTTATGATAGGTGTGGTGAAGTCTGTGCTGAATATGCCAAGACATTTTATCTAGGCACACAATTGATGACCCAAGAGCGCAGAAAAGCCATCTGGGCCATATATGTGTGGTGCAGAAGAACAGATGAACTAGTGGATGGACCTAATGCTTCTCACATCACACCAAAGGCCTTGGACAGGTGGGAGCAAAGATTATCTGATGTTTTCGAAGGCCGGCCTTATGATATGTATGATGCTGCCCTCTCAGATACAGTCTCAAAGTACCCAGTTGATATACAGCCATTTAAGGACATGATTGAAGGGATGAGGCTTGATCTGAGAAAGTCAAGATACAATAGCTTTGATGAACTCTACCTTTACTGCTACTATGTAGCAGGGACAGTGGGCCTTATGAGTGTTCCAGTAATGGGGATAGCACCAGAATCAAAGGCTACAACAGAGAGCGTTTATAATGCTGCATTGGCACTTGGCATAGCTAATCAACTTACCAACATTCTCAGAGACGTTGGAGAAGATGCAAGAAGAGGAAGAGTATATCTTCCACAAGATGAATTGGCACAAGCTGGCCTAACAGATGATGACATTTTTAGAGGGAAAGTTACCGACAAGTGGCGCAATTTCATGAAGGGCCAAATACAGAGAGCAAGGATGTTTTTTGATGAGGCAGAGAAGGGAGTTTCGGAGCTCAACTCTGCAAGCAGGTGGCCTGTATGGGCATCTTTGTTGTTGTATGGGCAAATCTTAGATTCTATTGAAGCTAATGACTACAATAACTTCACTAAAAGAGCTTATGTAGGAAAAGTTAAGAAGCTCTTATCACTACCTGCTGCTTATGGAAGAGCACTTCTAGGCCCCCAAAAGTTAACCAAGATGGTTACAAGAAGTATGTAA

Predicted protein sequences of Glyma08g41890

Limit To All Plant Sequences

>Glyma08g41890.2   sequence type=predicted peptide   gene model=Glyma08g41890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGVLLWVSCGPKENPISIVGLGGRGGRSQRRFGLCNGISFASFSPAVADPSRSSEERVYEVVLKQAALVKEQDKGTKRALNLDKPTIEGDLTNGDLLSDAYDRCGEVCAEYAKTFYLGTQLMTQERRKAIWAIYVWCRRTDELVDGPNASHITPKALDRWEQRLSDVFEGRPYDMYDAALSDTVSKYPVDIQPFKDMIEGMRLDLRKSRYNSFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLTDDDIFRGKVTDKWRNFMKGQIQRARMFFDEAEKGVSELNSASRWPVWASLLLYGQILDSIEANDYNNFTKRAYVGKVKKLLSLPAAYGRALLGPQKLTKMVTRSM*

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