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Report for Sequence Feature Glyma08g41790

Feature Type:gene_model
Chromosome:Gm08
Start:41713252
stop:41714775
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g41790
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G07900AT Annotation by Michelle Graham. TAIR10: Mitochondrial transcription termination factor family protein | chr5:2520188-2521405 FORWARD LENGTH=405 SoyBaseE_val: 3.00E-83ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG1267 KOG Mitochondrial transcription termination factor, mTERF JGI ISS
PTHR13068Panther CGI-12 PROTEIN-RELATED JGI ISS
PTHR13068:SF3Panther SUBFAMILY NOT NAMED JGI ISS
PF02536PFAM mTERF JGI ISS
UniRef100_D7M0N3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial transcription termination factor family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M0N3_ARALL SoyBaseE_val: 8.00E-81ISS
UniRef100_I1KXX7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXX7_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g41790
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g41790 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g305300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g41790
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g41790
>Glyma08g41790.1   sequence type=CDS   gene model=Glyma08g41790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATCATTTTCTGTTTGCAAGATTAACTACTAGAACACTCCATTATAGTGTTCTCTTACACAATGTTACGCCTTTCTTCACTTCACGCACTCTATCTGTATCAAGCACAAATCATCGCAAAGATGGCACCTTTAATGTATTTAGCCTCATCAACTCATGTGGGTTGTCCCCTGAAGTGGCCCTGAAACTCTCCAGAAGGTTGGAATTGAAAAACCCAGATGGGCCAAACGCTGTAATTGAGATTCTCAGGAACTATGGGTTTTCTGATACCCAGCTATGTAGCCTTGTAAAGAAAATCCCTTTGGTGCTTTTGTCAAAACCTGAAAAGACCCTTTTGCCAAAACTCAAGTTCTTCCTTTCTATTGGGTTTTCAACCACTGACCTTCCCAGATTCCTCATTGGAAACACTACATTTTTGGGATTGAGCTTGCACAAAACCATTATCCCCCGTTACCAGATCATCAAGAGTCTAGTTCACAGTGATAAAGAAGTAGTTTCCACTTTGAAGAATGATAGGAGGTACTTTAACCGTTGGATGTCAATCGATGCGGTTCGAAATGTAGGGACTTTGAGACACCTTGGGGTGCCTCAACGTTCCATTTCGTTATTGGTAACCAATTTTCCTAGTGTAACATTTATGGAGCATTCGAGGTTTTTTGAGGCTGTGGAGAAAGTGAAGGTAACTGGGTTTGATCCTTTGAAATCAAATTTTGTATTGGCACTTCAAGTGCTTGCAAAGATGAATGAGGCAATGTGGGAATCCAAATTAATGGTTTTTGAGAAGTGGGGATGGTCCAGAGATATCTGTCTTTTAGTTTTCAAAAAGCATCCCCAATTTATTATGTTGTCAGAAGAGAAGATTATGAAAATATTGAACTTCTTGATGAAAGACATAGGTTTGCCCGTAGAGAACATCGCTGGATGCCCTGAGGTTCTTAAATGCAACCTGGAGAAGACAGTTATGCCTAGATTTGCAGTTGTTGAAATTTTGAAGTCAAGGGGTTTGATAAAGAGAGATTCTAAAATAAGTAGCTTTATCAAGATCAGCGAGAAAATGTTTTTGGAGAAATATGTGATCCGATTTCTAAAAAATGAGCCACTACTACTGGATGCATACAGAGGTCAGAAGTCAAATTGA
Predicted protein sequences of Glyma08g41790
>Glyma08g41790.1   sequence type=predicted peptide   gene model=Glyma08g41790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHHFLFARLTTRTLHYSVLLHNVTPFFTSRTLSVSSTNHRKDGTFNVFSLINSCGLSPEVALKLSRRLELKNPDGPNAVIEILRNYGFSDTQLCSLVKKIPLVLLSKPEKTLLPKLKFFLSIGFSTTDLPRFLIGNTTFLGLSLHKTIIPRYQIIKSLVHSDKEVVSTLKNDRRYFNRWMSIDAVRNVGTLRHLGVPQRSISLLVTNFPSVTFMEHSRFFEAVEKVKVTGFDPLKSNFVLALQVLAKMNEAMWESKLMVFEKWGWSRDICLLVFKKHPQFIMLSEEKIMKILNFLMKDIGLPVENIAGCPEVLKCNLEKTVMPRFAVVEILKSRGLIKRDSKISSFIKISEKMFLEKYVIRFLKNEPLLLDAYRGQKSN*






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