Glyma08g41650 - SoyBase

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Report for Sequence Feature Glyma08g41650

Feature Type:	gene_model
Chromosome:	Gm08
Start:	41602926
stop:	41607854
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g41650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G10260	AT	Annotation by Michelle Graham. TAIR10: Reticulon family protein \| chr3:3171413-3172508 REVERSE LENGTH=247	SoyBase	E_val: 3.00E-99	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
KOG1792	KOG	Reticulon	JGI		ISS
PTHR10994	Panther	RETICULON/NOGO	JGI		ISS
PTHR10994:SF27	Panther	RETICULON-RELATED (PLANT)	JGI		ISS
PF02453	PFAM	Reticulon	JGI		ISS
UniRef100_G7KD06	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Reticulon-like protein B8 n=1 Tax=Medicago truncatula RepID=G7KD06_MEDTR	SoyBase	E_val: 5.00E-110	ISS
UniRef100_I1KXW8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KXW8_SOYBN	SoyBase	E_val: 3.00E-177	ISS

Expression Patterns of Glyma08g41650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g41650

Paralog	Evidence	Comments
Glyma18g14460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g41650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g304100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g41650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g41650

Limit To All Plant Sequences

>Glyma08g41650.4   sequence type=transcript   gene model=Glyma08g41650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTGTTTTTAGCCATCACGTCTTATCTTCCATTTCCATGCTTATTGCATAATTTCTCTAGAGCAAAAGTCTCGAAGGTTTTCCATTAAAATCAGAATCCAAAACCAAATCAAAATCAAAATTAAATACATATAAAAGGAGAAACATATGATGTGGGGTGGTTGTTAGTTGACTAGTTGCAAGTTGGTGAGTTCAGTTATTAAGCTCTTTTGGCATGCTTCTTGCTGGTCTTAGGGTGAACTTTTGATGCCATAAAAAACCATCCCATATTAGTTCTATTTCTCTCTCTGCCTCTCCCTTTGTTTCAAGTTCCCTCTGCTTATTCTGCACAGGAACGATGTCTGAGAAAACCACAGCTGAGAACCTTATTGAAAACCTTGTGGACACATTTGTTGATAAGAAAAAATCTGTATCATTCTTTGAGGATGATAAGTCAGACTCAGTGAGTTCTCAGATCAATAGACTGTTTGGACGCCAGAAACCTGTGCACCATGTTTTAGGGGGTGGAAAATCTGCGGATGTCTTGCTATGGAGGAACAAGAAGATTTCTGCTAGTGTTTTAGCATGTGCAACGATTGCATGGGTGCTTTTCGAATGGCTTAATTACAACTTTCTTACTATCTTATGCTTTGGTTTGGTTCTTGTCATGCTTGCACAGTTTCTATGGTCAAATGCTTCCAGCATGTTTAACAGTTCACCATCTAATGTACCCCGTCTTGTTCTCCCAGAAGAACTCTTTCTGAACATTGCAACTGTGGTTGGTGGTAAGGTTAACATGGGCTTGAGGTTTCTTCAAGATGCTGCTTGCGGAGGAAACTTGAAGCAGTTTCTTATTGTTGTTGGATGTCTGTTTGCTGGTGCTGTGATCGGGAGCTGGTGCAATTTTATATCTGTCATCTATATTGGTTTTGTTGCAGCACATACACTTCCAGTTCTCTATGAGAAGTATGAGGATGAAGTTGACAACTTTGTATACAAGGTCTTTGGTCAGATGCAAAATCAATATCGAAATTTGGATGCTAGTGTGCTCAGCAAAATCCCCAAGGGAAAAGGGAAGAAACATGAATAGGTTTATCCTTATGGCTTATGTTAATTATTTGACATTCAATTCCCATCTGAACACATTATGGCAATTGGGAATGATGGAAGAAGGTAACAAGAGGGATCAAAATATTTCTTCCATATGAATGATAGAGTGGAATAAATTTAAAATTGCATTTATTGTTGTAGTGTCTATTGTTCCTTTGCCTAAATTGTGATCTTGAAATGTTGTTATCGCATTACTTGGCCAGAGACTACATTGGTGACTGTTGCAAACTTGTGACGGCACTTCAAAGGCAGGTTGTAATATGTATATTTGGACTAAGCACATTGTTAATTTTGTTATAGTCAATGACCAACATTGTTGTCTATATGGTGTTATTAAGCACGGATAATTATTGGATATTGTATTGGGTTAAGTGGGTGTACACTAGCACACCGCCGGAATGATTTGTTAACTCGTTTTTTAGAAGTACTTTAGCCAGATATTTAAAAACAAAAATTATGATTCTTTTATATTTAAGTATTTAAAATA

Coding sequences of Glyma08g41650

Limit To All Plant Sequences

>Glyma08g41650.3   sequence type=CDS   gene model=Glyma08g41650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGAGAAAACCACAGCTGAGAACCTTATTGAAAACCTTGTGGACACATTTGTTGATAAGAAAAAATCTGTATCATTCTTTGAGGATGATAAGTCAGACTCAGTGAGTTCTCAGATCAATAGACTGTTTGGACGCCAGAAACCTGTGCACCATGTTTTAGGGGGTGGAAAATCTGCGGATGTCTTGCTATGGAGGAACAAGAAGATTTCTGCTAGTGTTTTAGCATGTGCAACGATTGCATGGGTGCTTTTCGAATGGCTTAATTACAACTTTCTTACTATCTTATGCTTTGGTTTGGTTCTTGTCATGCTTGCACAGTTTCTATGGTCAAATGCTTCCAGCATGTTTAACAGTTCACCATCTAATGTACCCCGTCTTGTTCTCCCAGAAGAACTCTTTCTGAACATTGCAACTGTGGTTGGTGGTAAGGTTAACATGGGCTTGAGGTTTCTTCAAGATGCTGCTTGCGGAGGAAACTTGAAGCAGTTTCTTATTGTTGTTGGATGTCTGTTTGCTGGTGCTGTGATCGGGAGCTGGTGCAATTTTATATCTGTCATCTATATTGGTTTTGTTGCAGCACATACACTTCCAGTTCTCTATGAGAAGTATGAGGATGAAGTTGACAACTTTGTATACAAGGTCTTTGGTCAGATGCAAAATCAATATCGAAATTTGGATGCTAGTGTGCTCAGCAAAATCCCCAAGGGAAAAGGGAAGAAACATGAATAG

>Glyma08g41650.4   sequence type=CDS   gene model=Glyma08g41650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGAGAAAACCACAGCTGAGAACCTTATTGAAAACCTTGTGGACACATTTGTTGATAAGAAAAAATCTGTATCATTCTTTGAGGATGATAAGTCAGACTCAGTGAGTTCTCAGATCAATAGACTGTTTGGACGCCAGAAACCTGTGCACCATGTTTTAGGGGGTGGAAAATCTGCGGATGTCTTGCTATGGAGGAACAAGAAGATTTCTGCTAGTGTTTTAGCATGTGCAACGATTGCATGGGTGCTTTTCGAATGGCTTAATTACAACTTTCTTACTATCTTATGCTTTGGTTTGGTTCTTGTCATGCTTGCACAGTTTCTATGGTCAAATGCTTCCAGCATGTTTAACAGTTCACCATCTAATGTACCCCGTCTTGTTCTCCCAGAAGAACTCTTTCTGAACATTGCAACTGTGGTTGGTGGTAAGGTTAACATGGGCTTGAGGTTTCTTCAAGATGCTGCTTGCGGAGGAAACTTGAAGCAGTTTCTTATTGTTGTTGGATGTCTGTTTGCTGGTGCTGTGATCGGGAGCTGGTGCAATTTTATATCTGTCATCTATATTGGTTTTGTTGCAGCACATACACTTCCAGTTCTCTATGAGAAGTATGAGGATGAAGTTGACAACTTTGTATACAAGGTCTTTGGTCAGATGCAAAATCAATATCGAAATTTGGATGCTAGTGTGCTCAGCAAAATCCCCAAGGGAAAAGGGAAGAAACATGAATAG

Predicted protein sequences of Glyma08g41650

Limit To All Plant Sequences

>Glyma08g41650.3   sequence type=predicted peptide   gene model=Glyma08g41650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEKTTAENLIENLVDTFVDKKKSVSFFEDDKSDSVSSQINRLFGRQKPVHHVLGGGKSADVLLWRNKKISASVLACATIAWVLFEWLNYNFLTILCFGLVLVMLAQFLWSNASSMFNSSPSNVPRLVLPEELFLNIATVVGGKVNMGLRFLQDAACGGNLKQFLIVVGCLFAGAVIGSWCNFISVIYIGFVAAHTLPVLYEKYEDEVDNFVYKVFGQMQNQYRNLDASVLSKIPKGKGKKHE*

>Glyma08g41650.4   sequence type=predicted peptide   gene model=Glyma08g41650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEKTTAENLIENLVDTFVDKKKSVSFFEDDKSDSVSSQINRLFGRQKPVHHVLGGGKSADVLLWRNKKISASVLACATIAWVLFEWLNYNFLTILCFGLVLVMLAQFLWSNASSMFNSSPSNVPRLVLPEELFLNIATVVGGKVNMGLRFLQDAACGGNLKQFLIVVGCLFAGAVIGSWCNFISVIYIGFVAAHTLPVLYEKYEDEVDNFVYKVFGQMQNQYRNLDASVLSKIPKGKGKKHE*

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