Glyma08g41620 - SoyBase

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Report for Sequence Feature Glyma08g41620

Feature Type:	gene_model
Chromosome:	Gm08
Start:	41575799
stop:	41581534
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g41620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G43010	AT	Annotation by Michelle Graham. TAIR10: phytochrome interacting factor 4 \| chr2:17887003-17888823 FORWARD LENGTH=428	SoyBase	E_val: 4.00E-47	ISS
GO:0000165	GO-bp	Annotation by Michelle Graham. GO Biological Process: MAPK cascade	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0009704	GO-bp	Annotation by Michelle Graham. GO Biological Process: de-etiolation	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010017	GO-bp	Annotation by Michelle Graham. GO Biological Process: red or far-red light signaling pathway	SoyBase	N/A	ISS
GO:0010161	GO-bp	Annotation by Michelle Graham. GO Biological Process: red light signaling pathway	SoyBase	N/A	ISS
GO:0010310	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0010600	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of auxin biosynthetic process	SoyBase	N/A	ISS
GO:0010928	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of auxin mediated signaling pathway	SoyBase	N/A	ISS
GO:0030003	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0035304	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR12565	Panther	STEROL REGULATORY ELEMENT-BINDING PROTEIN	JGI		ISS
PTHR12565:SF7	Panther	CENTROMERE-BINDING PROTEIN 1, CBP-1	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_B6SV80	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: PIL5 n=1 Tax=Zea mays RepID=B6SV80_MAIZE	SoyBase	E_val: 6.00E-51	ISS
UniRef100_I1KXW5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KXW5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g41620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g41620

Paralog	Evidence	Comments
Glyma18g14530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g41620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g303900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g41620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g41620

Limit To All Plant Sequences

>Glyma08g41620.1   sequence type=CDS   gene model=Glyma08g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAACAGTGTTCCTGATTGGAATTTTGGGAGTGATTCCTGTGTCACCTCCACCAATCAAAAGAAGCCCATGATGGGGGTGGACCAAGAGCTTGTGGAGCTTCTGTGGCAAAATGGCCAGGTAGTGCACAGCCAAACTCATAGAAAACCGGTTGTGAACTCAAGTAACTTGATTCAAGATGATGAGACAGTCTCATGGATCCAATACCCTCTTGAGGATCCATTGGAACAAGAATTCTGTTCAAACCTTTTGTCTGAACTGGCACCTTGTGAAGTTGAGTCCTATAAGCAAATCAAGCCATTTGAAGAGGGAAAATTTACCAAATTGGATGCTTCTAGTGCCCCTCATGTGACTGTAAGTTCACAATTACCTACCATGAAATCCTCCTCTTTTCAGGATTTCTCAGGAATTCCTATACCGGCCCCAAGATTCCATGTTTCTGATTCACCTCAGAAAAACAATAATCACTTGGGTGGATCATGTAAGGTCCAAAACTTCTCTCACTTTTCAGCACCCCTTAATGTTTCTTCAGCATCGGCTAACGTGCATTTTGGAGACAAAATTACTGGTAACATGTCAAGAAATGAGATTAGGGAGTGCTCATTGATGACAGTTGGATCAAGTTACTGTGGTAGCAATCACATCCCCCAAGATCCAGATGCTAGCAGGGCATCAAGCAATGGTGTTTGGACTACTACTTTATCAGTCGAGCCAGAAGCTGTTAGAGACGATGTGCCGAAAACAATTCCTCAGAAGGAGAAAGGGAAATCAGAGATGCTTGAACCAGCTGTGACTTCATCATCTGGTGGCTCAGGTAGTAGTCTTGGAAAAACTTGTTCATTATCTACGAGAAACCAGGGCCAAAAAAGAAAAGGAATAGACGTGGAAGAATCTGAGGAGCAAAGTGAGGACACAGAACTTAAATCAGCACTTGGAAACAAGTCATCTCAACGCACAGGGTCGGCTCGAAGGAACCGTGCTGCTGAAGTGCATAATCTATCGGAAAGGAGAAGGAGAGACAGGATCAATGAGAAGATGAAGGCATTGCAACAACTCATACCTCACAGTAGCAAGACAGACAAAGCATCGATGTTGGAAGAGGCAATTGAATACTTGAAATCACTTCAGCTACAACTTCAGCTAATGTGGATGGGATCTGGCATGGCACCAATAATGTTTCCAGGAATTCAGCACTACATGTCACAAATGGGCATGGGAATGGCTAGACCGCCTTTCCCTCCTCCTATTCATAATCCGATGCAATTACCGAGAGTGCCGCTTGATAAGTCTGTATCTGCATCTCAGACACCAAACCAGACATTAATGTGCCAAAATCCCATTTTGGGTGCATTTAATTACCAAAATCAGATGCAAAATCCAGCTCTTTCGGAGCAATATGTGCGTTACATGGGCTATCATCTTATGCAAAATGCCTCTCAGCCAATGAATGTATTCAGATATGGTCCCCAGGGAGTACAACATAGTCAAACAATGATTACACCCAGCAGCAACAGCAGTGGAAACATGAGTGGAGCAGCAAATATTGATGAGGCTGTGAGTGGCAAAATGGGTTAA

Predicted protein sequences of Glyma08g41620

Limit To All Plant Sequences

>Glyma08g41620.1   sequence type=predicted peptide   gene model=Glyma08g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNSVPDWNFGSDSCVTSTNQKKPMMGVDQELVELLWQNGQVVHSQTHRKPVVNSSNLIQDDETVSWIQYPLEDPLEQEFCSNLLSELAPCEVESYKQIKPFEEGKFTKLDASSAPHVTVSSQLPTMKSSSFQDFSGIPIPAPRFHVSDSPQKNNNHLGGSCKVQNFSHFSAPLNVSSASANVHFGDKITGNMSRNEIRECSLMTVGSSYCGSNHIPQDPDASRASSNGVWTTTLSVEPEAVRDDVPKTIPQKEKGKSEMLEPAVTSSSGGSGSSLGKTCSLSTRNQGQKRKGIDVEESEEQSEDTELKSALGNKSSQRTGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQLMWMGSGMAPIMFPGIQHYMSQMGMGMARPPFPPPIHNPMQLPRVPLDKSVSASQTPNQTLMCQNPILGAFNYQNQMQNPALSEQYVRYMGYHLMQNASQPMNVFRYGPQGVQHSQTMITPSSNSSGNMSGAANIDEAVSGKMG*

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