Glyma08g41570 - SoyBase

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Report for Sequence Feature Glyma08g41570

Feature Type:	gene_model
Chromosome:	Gm08
Start:	41532326
stop:	41538080
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g41570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G43020	AT	Annotation by Michelle Graham. TAIR10: polyamine oxidase 2 \| chr2:17891945-17894440 FORWARD LENGTH=490	SoyBase	E_val: 0	ISS
GO:0006598	GO-bp	Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0008131	GO-mf	Annotation by Michelle Graham. GO Molecular Function: primary amine oxidase activity	SoyBase	N/A	ISS
GO:0046592	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polyamine oxidase activity	SoyBase	N/A	ISS
KOG0029	KOG	Amine oxidase	JGI		ISS
PTHR10742	Panther	AMINE OXIDASE	JGI		ISS
PTHR10742:SF30	Panther	AMINE OXIDASE	JGI		ISS
PF01593	PFAM	Flavin containing amine oxidoreductase	JGI		ISS
UniRef100_G7KD02	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Polyamine oxidase n=1 Tax=Medicago truncatula RepID=G7KD02_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KXW2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXW2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g41570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g41570

Paralog	Evidence	Comments
Glyma18g14620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g41570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g303800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g41570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g41570

Limit To All Plant Sequences

>Glyma08g41570.3   sequence type=transcript   gene model=Glyma08g41570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGACCAGCGTTTGAACAAATTCTATAAATCTTAGACCAGTATTGCTTTCCGATATCGCTCCTCAACCGTTCTTCTTCTTTTTCTCTCTCTAGAATTTTTTTTTTCTCTCTCTCTCTCCCATCTCTCGGAAAATTTTTCAGAGCTTCCTAAAGCCTTTAGAATTCTCTGGAACCTTTTTGTTCGTCCGCCGAGGATCGCAATTCCTCCAAATCGTCGTCACTCGTCGCTTAGTTCGGTTCTAACTGCATGAACTGGTTCGGGAAGCTGGATTCATCATCGTCGAACTTGAACTTCAATCACTTCGTTACTTGTCTGTTGATTTTTATCCTCCATTTTTCGCCTCAATCGCTCTCTTCCACCTTCGATAGTAACACTAATCTCGAATTTAATTCCGAATATGGAGTCGAGAACTAAGAGTAATCCCCAATTAACAAGAGCTCTTTGCTATGCAAACGATGGCAATCAGCAGGGAAGGTCACCATCTGTTATTGTCATTGGTGGTGGCATGGCTGGGATTGCTGCTGCTCGTTCGCTCCATGATGCTTCGTTACAGGTTGTTCTCTTAGAGTCAAGGGAAAGAATTGGTGGCCGAATTCACACTGATTACTCATTTGGTTTTCCTGTGGACATGGGAGCATCATGGTTGCATGGAGTTTCCAATGAAAATCCACTGGCTTCGGTGATTGGGAGGCTAGGTCTACCCCTTTACCGTACTAGTGGGGATAATTCCATACTCTATGACCATGATTTGGAAAGCTATGGACTTTTTGATATGGATGGGAAACAGGTTCCTCAAGAGTTGGTAGCAAAAGTTGGTGAAATATTTGAGGCAATTTTGCAGGAGACAGATAAAATAAGGCAAGAATCCAGTGAAGACATGTCTGTACTTCGTGGTCTTTCAATCGTTTTCGATAGGAAGCCAGAACTGAGGTTGGAGGGGATTGCTTATAAGGTACTTCAGTGGTATTTATGTAGACTGGAGGGCTGGTTTGCTGCAGACACTGATGCTATTTCACTGAAAGGATGGGACCAGGAGGTACTGCTCCCTGGTGGTCATGGTCTTATGGTCCGTGGCTACTTGCCTGTTGTAAATAGCCTAGCCAAGGGTCTTGATATTCGATTGGGGCACAGGGTCACAAAAGTAGTTAGGCGATATAATGGAGTAAAGGTAACTGTGGAAAATGGGAAAACGTTTTTTGCTGATGCTGCTGTTATTGCTGTCCCACTTGGGGTGCTTAAGGCGAAGAAAATATTGTTTGAGCCAAAGCTTCCAGACTGGAAGGAAGCTGCCATTGCTGATCTTGGGATTGGACTTGAGAATAAAATCATTTTACACTTTGAAAATGTGTTTTGGCCTAATGTGGAGTTCTTGGGAGTAGTTGCAGATACACCTTATGAATGTAGCTACTTCCTTAATCTCCACAAGGCCACAGGTCGTGCTGTTCTCGTTTACATGCCTTCTGGGCAGCTTGCCAAAGACGTTGAAAAGATGCCTGATGAAGCAGCTGTCAACTTCGCTTTCATGCAGCTCAAGAAGATTTTTCCAGATGCTTCTTCACCGGGGAAGCAACAAGCATGAGCTATCCAGGATCTGTCCATGGGGCATACTCCACTGGAACGATGGCTGCTGAAGATTGCCGGATGCGTGTGCTCGAGCGATATGGAGAGGTTGATTTATTCCAGCCAGTGATGGGAGAAGAGGGTTCCATGTCTATCCCGCTTCAGATATCGCGTCTTTAATCGTCTTTGGGTCACAACTAGTGGACAGAAACACAATCTATCTATGCTTGTTCTTTTGTTATCAACCTATATATAAGTTATATAGCAAATGTTTTGGCAAATAGTCTTTAAGAGTATATGTCCACTTGTGAAATCACATTTTGTGTTGGATTTCCTTAGTCAGTGTTTCCAGTAACTGGTAATGTGAATATTGCGCACCTAAGAGGCGTTGTCACTTCTATCAGTATACTTATAATAAAATTGGGACAACAATTTATGTGTTTTTCTCGTATTTTAGATTTCATCTTTTAACAGCTAACCCTGTCAGAACTCAGAATAACTTAACAGAACCTGTGTACTATAATCTTTCC

Coding sequences of Glyma08g41570

Limit To All Plant Sequences

>Glyma08g41570.1   sequence type=CDS   gene model=Glyma08g41570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCGAGAACTAAGAGTAATCCCCAATTAACAAGAGCTCTTTGCTATGCAAACGATGGCAATCAGCAGGGAAGGTCACCATCTGTTATTGTCATTGGTGGTGGCATGGCTGGGATTGCTGCTGCTCGTTCGCTCCATGATGCTTCGTTACAGGTTGTTCTCTTAGAGTCAAGGGAAAGAATTGGTGGCCGAATTCACACTGATTACTCATTTGGTTTTCCTGTGGACATGGGAGCATCATGGTTGCATGGAGTTTCCAATGAAAATCCACTGGCTTCGGTGATTGGGAGGCTAGGTCTACCCCTTTACCGTACTAGTGGGGATAATTCCATACTCTATGACCATGATTTGGAAAGCTATGGACTTTTTGATATGGATGGGAAACAGGTTCCTCAAGAGTTGGTAGCAAAAGTTGGTGAAATATTTGAGGCAATTTTGCAGGAGACAGATAAAATAAGGCAAGAATCCAGTGAAGACATGTCTGTACTTCGTGGTCTTTCAATCGTTTTCGATAGGAAGCCAGAACTGAGGTTGGAGGGGATTGCTTATAAGGTACTTCAGTGGTATTTATGTAGACTGGAGGGCTGGTTTGCTGCAGACACTGATGCTATTTCACTGAAAGGATGGGACCAGGAGGTACTGCTCCCTGGTGGTCATGGTCTTATGGTCCGTGGCTACTTGCCTGTTGTAAATAGCCTAGCCAAGGGTCTTGATATTCGATTGGGGCACAGGGTCACAAAAGTAGTTAGGCGATATAATGGAGTAAAGGTAACTGTGGAAAATGGGAAAACGTTTTTTGCTGATGCTGCTGTTATTGCTGTCCCACTTGGGGTGCTTAAGGCGAAGAAAATATTGTTTGAGCCAAAGCTTCCAGACTGGAAGGAAGCTGCCATTGCTGATCTTGGGATTGGACTTGAGAATAAAATCATTTTACACTTTGAAAATGTGTTTTGGCCTAATGTGGAGTTCTTGGGAGTAGTTGCAGATACACCTTATGAATGTAGCTACTTCCTTAATCTCCACAAGGCCACAGGTCGTGCTGTTCTCGTTTACATGCCTTCTGGGCAGCTTGCCAAAGACGTTGAAAAGATGCCTGATGAAGCAGCTGTCAACTTCGCTTTCATGCAGCTCAAGAAGATTTTTCCAGATGCTTCTTCACCGATTCAGTATCTTGTGTCTCGTTGGGGATCAGATATAAATTCACTAGGTTCATATAGCTATGATGCAGTTGGGAAACCCCATGAACTATATGAGAGGCTACGGGTCCCAGTAGATAACTTGTTCTTTGCAGGGGAAGCAACAAGCATGAGCTATCCAGGATCTGTCCATGGGGCATACTCCACTGGAACGATGGCTGCTGAAGATTGCCGGATGCGTGTGCTCGAGCGATATGGAGAGGTTGATTTATTCCAGCCAGTGATGGGAGAAGAGGGTTCCATGTCTATCCCGCTTCAGATATCGCGTCTTTAA

>Glyma08g41570.3   sequence type=CDS   gene model=Glyma08g41570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCGAGAACTAAGAGTAATCCCCAATTAACAAGAGCTCTTTGCTATGCAAACGATGGCAATCAGCAGGGAAGGTCACCATCTGTTATTGTCATTGGTGGTGGCATGGCTGGGATTGCTGCTGCTCGTTCGCTCCATGATGCTTCGTTACAGGTTGTTCTCTTAGAGTCAAGGGAAAGAATTGGTGGCCGAATTCACACTGATTACTCATTTGGTTTTCCTGTGGACATGGGAGCATCATGGTTGCATGGAGTTTCCAATGAAAATCCACTGGCTTCGGTGATTGGGAGGCTAGGTCTACCCCTTTACCGTACTAGTGGGGATAATTCCATACTCTATGACCATGATTTGGAAAGCTATGGACTTTTTGATATGGATGGGAAACAGGTTCCTCAAGAGTTGGTAGCAAAAGTTGGTGAAATATTTGAGGCAATTTTGCAGGAGACAGATAAAATAAGGCAAGAATCCAGTGAAGACATGTCTGTACTTCGTGGTCTTTCAATCGTTTTCGATAGGAAGCCAGAACTGAGGTTGGAGGGGATTGCTTATAAGGTACTTCAGTGGTATTTATGTAGACTGGAGGGCTGGTTTGCTGCAGACACTGATGCTATTTCACTGAAAGGATGGGACCAGGAGGTACTGCTCCCTGGTGGTCATGGTCTTATGGTCCGTGGCTACTTGCCTGTTGTAAATAGCCTAGCCAAGGGTCTTGATATTCGATTGGGGCACAGGGTCACAAAAGTAGTTAGGCGATATAATGGAGTAAAGGTAACTGTGGAAAATGGGAAAACGTTTTTTGCTGATGCTGCTGTTATTGCTGTCCCACTTGGGGTGCTTAAGGCGAAGAAAATATTGTTTGAGCCAAAGCTTCCAGACTGGAAGGAAGCTGCCATTGCTGATCTTGGGATTGGACTTGAGAATAAAATCATTTTACACTTTGAAAATGTGTTTTGGCCTAATGTGGAGTTCTTGGGAGTAGTTGCAGATACACCTTATGAATGTAGCTACTTCCTTAATCTCCACAAGGCCACAGGTCGTGCTGTTCTCGTTTACATGCCTTCTGGGCAGCTTGCCAAAGACGTTGAAAAGATGCCTGATGAAGCAGCTGTCAACTTCGCTTTCATGCAGCTCAAGAAGATTTTTCCAGATGCTTCTTCACCGGGGAAGCAACAAGCATGA

Predicted protein sequences of Glyma08g41570

Limit To All Plant Sequences

>Glyma08g41570.1   sequence type=predicted peptide   gene model=Glyma08g41570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESRTKSNPQLTRALCYANDGNQQGRSPSVIVIGGGMAGIAAARSLHDASLQVVLLESRERIGGRIHTDYSFGFPVDMGASWLHGVSNENPLASVIGRLGLPLYRTSGDNSILYDHDLESYGLFDMDGKQVPQELVAKVGEIFEAILQETDKIRQESSEDMSVLRGLSIVFDRKPELRLEGIAYKVLQWYLCRLEGWFAADTDAISLKGWDQEVLLPGGHGLMVRGYLPVVNSLAKGLDIRLGHRVTKVVRRYNGVKVTVENGKTFFADAAVIAVPLGVLKAKKILFEPKLPDWKEAAIADLGIGLENKIILHFENVFWPNVEFLGVVADTPYECSYFLNLHKATGRAVLVYMPSGQLAKDVEKMPDEAAVNFAFMQLKKIFPDASSPIQYLVSRWGSDINSLGSYSYDAVGKPHELYERLRVPVDNLFFAGEATSMSYPGSVHGAYSTGTMAAEDCRMRVLERYGEVDLFQPVMGEEGSMSIPLQISRL*

>Glyma08g41570.3   sequence type=predicted peptide   gene model=Glyma08g41570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESRTKSNPQLTRALCYANDGNQQGRSPSVIVIGGGMAGIAAARSLHDASLQVVLLESRERIGGRIHTDYSFGFPVDMGASWLHGVSNENPLASVIGRLGLPLYRTSGDNSILYDHDLESYGLFDMDGKQVPQELVAKVGEIFEAILQETDKIRQESSEDMSVLRGLSIVFDRKPELRLEGIAYKVLQWYLCRLEGWFAADTDAISLKGWDQEVLLPGGHGLMVRGYLPVVNSLAKGLDIRLGHRVTKVVRRYNGVKVTVENGKTFFADAAVIAVPLGVLKAKKILFEPKLPDWKEAAIADLGIGLENKIILHFENVFWPNVEFLGVVADTPYECSYFLNLHKATGRAVLVYMPSGQLAKDVEKMPDEAAVNFAFMQLKKIFPDASSPGKQQA*

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