|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G46470 | AT | Annotation by Michelle Graham. TAIR10: disease resistance protein (TIR-NBS-LRR class) family | chr5:18842701-18846809 FORWARD LENGTH=1127 | SoyBase | E_val: 3.00E-43 | ISS |
GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
GO:0043531 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ADP binding | SoyBase | N/A | ISS |
PTHR23155 | Panther | LEUCINE-RICH REPEAT-CONTAINING PROTEIN | JGI | ISS | |
PTHR23155:SF344 | Panther | JGI | ISS | ||
PF01582 | PFAM | TIR domain | JGI | ISS | |
UniRef100_G7J6M1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Tir-nbs-lrr resistance protein n=1 Tax=Medicago truncatula RepID=G7J6M1_MEDTR | SoyBase | E_val: 1.00E-62 | ISS |
UniRef100_I1KXW0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXW0_SOYBN | SoyBase | E_val: 3.00E-122 | ISS |
Glyma08g41552 not represented in the dataset |
Glyma08g41552 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.08g303600 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g41552.1 sequence type=CDS gene model=Glyma08g41552 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACCTTGTCCTTGATCATATTAGATAGTAAAGACAAGGAAAAAGTCCAAACCTATATAGATGATCAACTTGAAAAGGGAGATGAAATCTCACCAGCACTCACCAAAGCCATCGAAGATTCTCATGTATATATTCTAATTTTCTCAGAGAACGATGCTTCCTCAAAATGGTGCTTGGGTGAACTCATCAAGATTATGGAATGCAAGAATGAAAAAGGACAAATGGTAATACCAGTTTTCTACAACGTAGATTCATCCCATGTGAGGAAGCAGACAGGGAGCTGTGAGCAAGCCTTTGAAAAACATGAGGGAGAACCTAGGTGCAAGAAATGGAAAGCTGTTCTCACTGAAGCATTCAATTTAGCTGGGTGGAACTCTCGAACTTATAGGACTGATCCTGAATTACTTAAGGACATAGTTGGAGATGTTTTTCGAAAATTGCCTCCTAGATACCAAAACCAACGTAAAGGACTAGTCGGGATTGAGGAACATTGTAAAAAGATTGAATATTTACTAAAAATTGGGCAAAGTGAAGTTAAAACCCTTGGAATATGGGGCATGGATGGCATAGGTAAAACCACCCGTGCTACTACTTTATATCACAAACTACCTGATGAGTTTGAATATTGTTGCTTCCTCGCAAATGTAAGTGAAAAATCAGACAAGCTCCAAAACCATAGTTTTGGTAATTCTGATATGGCTACCTTTGAGCAATTAGATAAAAATAATAAAGAGCTTGGTTTAGATGATTCAATAACTATTCCTCATCTTCCAACATCTGACTTGTGCGGTTTCGTTTACTGCATCATTCTTTCTGTGGGATCAGCCTTAATTGGTAATGTTTGGTGTTCTACCTATGAAGATGGCATAGAGGTCAGCTGGGACAGAAGCAATATAATATTTATATTTGGATGGAATGGTGATGAAGAGAGGATAAAAGAATGTGGGGTCTTCCCAGTATATGCCACAACATCAGGATTGAAGCTGGTCAGCAATAGTGGCAAAGAAATTTTTGAATGTGAATCCATTGAGTGGGAACAACTTCTACATACATCAAAGAGGAGGAAGATTTCATGCCAGCAGAAATGA
>Glyma08g41552.1 sequence type=predicted peptide gene model=Glyma08g41552 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTLSLIILDSKDKEKVQTYIDDQLEKGDEISPALTKAIEDSHVYILIFSENDASSKWCLGELIKIMECKNEKGQMVIPVFYNVDSSHVRKQTGSCEQAFEKHEGEPRCKKWKAVLTEAFNLAGWNSRTYRTDPELLKDIVGDVFRKLPPRYQNQRKGLVGIEEHCKKIEYLLKIGQSEVKTLGIWGMDGIGKTTRATTLYHKLPDEFEYCCFLANVSEKSDKLQNHSFGNSDMATFEQLDKNNKELGLDDSITIPHLPTSDLCGFVYCIILSVGSALIGNVWCSTYEDGIEVSWDRSNIIFIFGWNGDEERIKECGVFPVYATTSGLKLVSNSGKEIFECESIEWEQLLHTSKRRKISCQQK*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||