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Report for Sequence Feature Glyma08g41544

Feature Type:gene_model
Chromosome:Gm08
Start:41508242
stop:41509891
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g41544
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G45520AT Annotation by Michelle Graham. TAIR10: Leucine-rich repeat (LRR) family protein | chr5:18449509-18453012 REVERSE LENGTH=1167 SoyBaseE_val: 3.00E-42ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR23155Panther LEUCINE-RICH REPEAT-CONTAINING PROTEIN JGI ISS
PTHR23155:SF128Panther NBS-LRR RESISTANCE PROTEIN RGH1-LIKE (PUTATIVE UNC JGI ISS
UniRef100_I1KXY0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KXY0_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q8LJ95UniRef Annotation by Michelle Graham. Most informative UniRef hit: NBS-LRR resistance protein RGH1-like n=2 Tax=Oryza sativa RepID=Q8LJ95_ORYSJ SoyBaseE_val: 2.00E-60ISS

Expression Patterns of Glyma08g41544
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g41544 not represented in the dataset
Glyma08g41544 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g41544 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g303500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g41544
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g41544
>Glyma08g41544.1   sequence type=CDS   gene model=Glyma08g41544   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTATTCGAACAAATCGCTTTAAAGCAGTGGATAGAGTGTTGAAGGATCTGGAGAGAGTAGAAAAAGAAGGGAAATTGAATGATTTGAAGTCTGAGTTGAACAAGATAAAGGAGGTGTTTTTGAAGGTGAAGGAGAATGAAGAAGAACTCCTTGACACGTTAGCGGTTGTGGATGGCTATATTCGCAACAAAAACATAGCTAAGTTGAGGGAAGAGGAGGGACACTTTTGCCAGAAAATATGGAATTCAACTCTAAAGTTGCTGCCAGCTGCTGCCTCATCTGGACAATCATCTCATCATGCTCAAGCTGCTGCCTCATCTCATCATCATGTCACACCACTCCCTTCTTCCACTCCACAACTTCATCAGGAGGAGGACTTGCAAAGGATTAAGGACTGTTATAACAGCCTTGGTCCTGAATTCAAACGTATCTTCTCATCTCTCTTGCAGTTTCCTGAAAATGCTGTTTTCAAGAGAAGGGAAATCGCTCTCTGGTTCTCTCAGTATGGTGATTATCGTTGGAATTCAGTTTGGGTTGATTCTATTTTGAAAAGTAAAGTAATTGTACCCCATGGTAATGGCAAGTCTCCCATTGCGAGTAAATTTAAAATTAATCCGTTGCTCCGTCACAAGTCACTAAGTCCATTGTTTCAAAATGAGGAAGTGCCGATTTGTGGTTATTATTCACAAATAAAGACCTCATCTTCATCTCGTGCCAGTGATATTGGGTATCAACGTTTAGTACTTGACCAACGTAAAATTAAAATAAGTGATGGTTTTGGTTTTAAATCGTTCCGTGCTGTTTATAATTTTGGTGCAAGTTATCTTAATTTTGGACCCGGATGGATGGCCAAAATGAAGGATTTGTGGGTGCTTCAACTGGGTCGTTTCATGCAAGATTCACCAAAACATCATATTGAAGTGGACAGTGAAGAATTCCTCAAGGAGTTGAGTGGTCACGAGGATTTGCTCTGTCTTAGCCTTCGAGGGATATCAAGAATATTCGAGCTTCCACCTTCCATCGTAAAAATTGAGAGCCTAGGAATTCTAGATCTCAAGGCCTGTCACAATCTAGAAACGCTACCTAGTGATATTTCATCATTGCAAAGTCTCTGGTATTTGAATTTGTCTGAGTGCTACTTGTTGGACAGAATGCCAAAGGGGATTCAGAACCTGACTAGGCTTAAGGTACTGAAGGGATTTGTATTAGGTAGTTCTAGCAAGACTCCCTGCAGAATATCTGATATTGCTGCAAATTTGAAAAGACTAGTGCGACTCAGCATACGTATAGGAAGTGGGGCTGTGATCCAAGAAGGCGAGTTTGAAAGCTTGAAAAAGTTGTCAGAACTTGAGCATCTAAAAATATCATGGGGTGTATTTGACACAAGGTACATTGATATTCAGATAAGTGTGCCTTCAAGTTTGAAAAAGTTGCATCTTGAAGGCTTTCCTGGCCAAAATATTCCAGAATGGTTGAAGCCTAGCAAACTATCTTGTTCATTGAGAGAGCTACATATAACAGGAGGAAAACTCAAAAGTTTGGATCATGGTGAAAATAATGATTGGGGTGTGGAGATGGTGTATCTCAAGTACCTAAAGGATTTGGATGTTGACTTGGAACATTTGAGAAAGTTGTTTCCTTCTCTA
Predicted protein sequences of Glyma08g41544
>Glyma08g41544.1   sequence type=predicted peptide   gene model=Glyma08g41544   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSIRTNRFKAVDRVLKDLERVEKEGKLNDLKSELNKIKEVFLKVKENEEELLDTLAVVDGYIRNKNIAKLREEEGHFCQKIWNSTLKLLPAAASSGQSSHHAQAAASSHHHVTPLPSSTPQLHQEEDLQRIKDCYNSLGPEFKRIFSSLLQFPENAVFKRREIALWFSQYGDYRWNSVWVDSILKSKVIVPHGNGKSPIASKFKINPLLRHKSLSPLFQNEEVPICGYYSQIKTSSSSRASDIGYQRLVLDQRKIKISDGFGFKSFRAVYNFGASYLNFGPGWMAKMKDLWVLQLGRFMQDSPKHHIEVDSEEFLKELSGHEDLLCLSLRGISRIFELPPSIVKIESLGILDLKACHNLETLPSDISSLQSLWYLNLSECYLLDRMPKGIQNLTRLKVLKGFVLGSSSKTPCRISDIAANLKRLVRLSIRIGSGAVIQEGEFESLKKLSELEHLKISWGVFDTRYIDIQISVPSSLKKLHLEGFPGQNIPEWLKPSKLSCSLRELHITGGKLKSLDHGENNDWGVEMVYLKYLKDLDVDLEHLRKLFPSL






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