Glyma08g41530 - SoyBase

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Report for Sequence Feature Glyma08g41530

Feature Type:	gene_model
Chromosome:	Gm08
Start:	41486827
stop:	41492006
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g41530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G23820	AT	Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein \| chr4:12397217-12400050 REVERSE LENGTH=444	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004650	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity	SoyBase	N/A	ISS
PF00295	PFAM	Glycosyl hydrolases family 28	JGI		ISS
UniRef100_G7KCZ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycoside hydrolase family 28 protein n=1 Tax=Medicago truncatula RepID=G7KCZ1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KXV7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KXV7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g41530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g41530

Paralog	Evidence	Comments
Glyma18g14640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g41530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g303200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g41530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g41530

Limit To All Plant Sequences

>Glyma08g41530.1   sequence type=CDS   gene model=Glyma08g41530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCTCCCACCCTTCCTCACTCTCACTTTCCTCCTCCTTTTCTTCAATGCTTCCGTCGCTGCGATTTACTCAACGACAACATGTTCCAACATAGTGTCGCTGAGATATCGCAGCGACAGAATTTCCGTAACGGACTTTGGAGGTGTCGGCGACGGCCGCACGCTGAACACGAAAGCGTTCAGGGCGGCCGTATACCGCATTCAGCACCTTAGAAGGCGCGGTGGCACGGTGCTTTACGTGCCTCCCGGGGTGTACTTAACGGAGAGCTTCAACCTCACTAGCCATATGACCCTTTATCTTGCTGCTGGTGCCGTTATCAAAGCCACGCAGGAGTTGGGGAATTGGCCTTTAATTGCACCCTTACCATCTTATGGAAGAGGAAGGGAGCTCCCTGGAGGAAGGTATATGAGTTTTATCCATGGAGATGGACTTAGTGATGTGGTAATCACAGGTGAGAATGGGACAATTGATGGGCAAGGAGACGTGTGGTGGAACATGTGGAGGCAGAGAACACTTCAATTTACAAGACCAAACCTTGTTGAATTTGTGAATTCACAAGATATTATTATTTCAAATGTGATTTTCAAGAATTCTCCCTTCTGGAATATACACCCAGTTTATTGCAGCAATGTTGTGGTTCGATATGTCACAATTTTGGCCCCTCGTGACTCTCCTAATACTGATGGAATTGATCCAGATTCAAGTTCAAATGTCTGCATAGAAGACTCATACATATCTACCGGAGATGATCTTGTGGCAGTGAAGAGTGGGTGGGATGAGTATGGTATTGCCTATGGTCGCCCTAGCTACGGTATCACCATCCGACGCTTAACAGGGTCATCTCCATTCGCTGGCATTGCAATTGGCAGTGAAACCTCTGGAGGGGTGGAGAATGTGCTAGCTGAACACATCAACCTCTTCAACATGGGAGTTGGTATCCACATCAAGACCAACAGTGGCAGGGGAGGGCTCATCAAGAACATCACAGTGGCTCATGTGTATGTGGAGAATGCAAGGCAGGGAATAAAAATAGCAGGTGACGTAGGGGGGCATCCAGATGAAAAATTTAACCCTAATGCTCTCCCAGTTGTGAAGGGTATCACAATTAAGAATGTTTGGGGAGTGAGGGTTAACCAGGCAGGTTTGATACATGGATTGAGAAATTCCCCTTTCACTGATGTTTGTCTGTCAAATATCAACTTTCATGGCATGAGAGGACCAAGATCTCCCTCCTGGAAGTGTTCTGATGTGTTTGGATTTGCTCATCAGGTTAGCCCTTGGCCATGTTCTCAGCTGAGCAGCCAAGAGCCTGGATCATGTGCCATTTAG

Predicted protein sequences of Glyma08g41530

Limit To All Plant Sequences

>Glyma08g41530.1   sequence type=predicted peptide   gene model=Glyma08g41530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLPPFLTLTFLLLFFNASVAAIYSTTTCSNIVSLRYRSDRISVTDFGGVGDGRTLNTKAFRAAVYRIQHLRRRGGTVLYVPPGVYLTESFNLTSHMTLYLAAGAVIKATQELGNWPLIAPLPSYGRGRELPGGRYMSFIHGDGLSDVVITGENGTIDGQGDVWWNMWRQRTLQFTRPNLVEFVNSQDIIISNVIFKNSPFWNIHPVYCSNVVVRYVTILAPRDSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSYGITIRRLTGSSPFAGIAIGSETSGGVENVLAEHINLFNMGVGIHIKTNSGRGGLIKNITVAHVYVENARQGIKIAGDVGGHPDEKFNPNALPVVKGITIKNVWGVRVNQAGLIHGLRNSPFTDVCLSNINFHGMRGPRSPSWKCSDVFGFAHQVSPWPCSQLSSQEPGSCAI*

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