Report for Sequence Feature Glyma08g41510
Feature Type: gene_model
Chromosome: Gm08
Start: 41472389
stop: 41479840
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g41510
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G22330 AT
Annotation by Michelle Graham. TAIR10: putative mitochondrial RNA helicase 2 | chr3:7892641-7895145 FORWARD LENGTH=616
SoyBase E_val: 0 ISS
GO:0000373 GO-bp
Annotation by Michelle Graham. GO Biological Process: Group II intron splicing
SoyBase N/A ISS
GO:0009409 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cold
SoyBase N/A ISS
GO:0005618 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cell wall
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005730 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleolus
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003676 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding
SoyBase N/A ISS
GO:0004386 GO-mf
Annotation by Michelle Graham. GO Molecular Function: helicase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0008026 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity
SoyBase N/A ISS
KOG0331
KOG
ATP-dependent RNA helicase
JGI ISS
PTHR24031 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24031:SF161 Panther
JGI ISS
PF00270 PFAM
DEAD/DEAH box helicase
JGI ISS
PF00271 PFAM
Helicase conserved C-terminal domain
JGI ISS
UniRef100_G7KCY5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: DEAD-box ATP-dependent RNA helicase n=1 Tax=Medicago truncatula RepID=G7KCY5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI0002338985 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002338985 related cluster n=1 Tax=unknown RepID=UPI0002338985
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g41510
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g41510
Paralog Evidence Comments
Glyma18g14670 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g41510 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g303000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g41510
Coding sequences of Glyma08g41510
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g41510.1 sequence type=CDS gene model=Glyma08g41510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACCAGCAGTGTGATTCTCAGAAGATCCTCTTCCGTAATCTCGCGCCGCTTCTTCGCCGCTCTCGCCTCCGTCGAGCCGCTTCCTCGCAGGTTCCCCGCCGACAGGTACGGTGTCTCCGGCGACGGATCCCGAACCATTCACACGAATCCCGGACCGTTGAATTTCCGCGCGTCGGCGGTTCCTCGCGCGGCGCAGTTCGCTGTCGAGCGCGATTACTCTAACTACGAGGAGGTTAGCGGCGCGAACAGTGACGAAGGACTAGAGATCGCGAATCTCGGGATCGCTCCGCAGATTGTAGATGCTCTGGCCAAGAAAGGGATTGCGAAGCTCTTCCCCATTCAGAGAGCTGTGCTGGAACCTGCAATGCAAGGACGTGATATGATTGGTCGAGCTAGAACAGGAACAGGGAAAACTCTTGCTTTTGGGATACCCATCTTGGACAGTATCATTCAGTTTAATGCTAAGCATGGGCAAGGAAGACATCCTTTGGCTTTGGTTTTGGCTCCGACTAGAGAACTTGCGCGGCAGGTTGAGAAGGAATTCAATGAGGCTGCACCTAACTTGGCCATGATCTGTCTTTATGGGGGTATGCCCATCCAGCAACAAATGAGGCAGCTTAATTATGGCGTAGATATTGCAGTAGGCACTCCTGGTCGAATTATTGATCTCCTCAACAGGGGGGCACTGAATTTAAAGAATGTCAAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGCTGTGGAGAAGATCCTGGAAGGGTTGTCTCCAAATCGTCAGACCCTTATGTTCTCAGCAACAATGCCATCTTGGATAAAGAATATTACCCGCAATTACCTGAACAACCCCCTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCGTTGTACTCTATTGTGTCTGATTCGTACACTAAAGCAGGAATTCTTGCACCTCTGATAACAGAACATGCGAATGGAGGAAAGTGTATTGTTTTCACTCAAACGAAACGTGATGCTGATCGATTATCATATGTCATGGCAAAAAGCCTTAGATGCGAGGCTTTGCATGGAGATATTTCACAAACTCAGAGGGAAAAAACTCTTGCTGGCTTCAGAAACAACAATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGGCTTGATATTCCCAATGTTGATCTTGTAATACATTACGATCTTCCCAATTCATCTGAGATATTTGTTCATCGATCTGGACGAACTGGCCGTGCTGGGAAGAAAGGAAGTGCGATTCTTGTTTACACACAAGGCCAATCCAGGGCTGTGCAGACTATTCAGCGTGATGTTGGATGCAAATTTACAGAGCTACCAAAGATTGATGCTCCTGCTGGATCAGCAGAGATGTTTACTGGCATGGGTGGTGGTCGATCTGGCTCTATGAGGGATCGTCAATCTGGAGGTACAGGTTTTGGTCGCAATCCTGGACTTGGTCGTTCTGGGAGTTACGGAAACTCTGGATTTGGCCGATCTAGCTATGGAAATTCCAGTGAGATGAATAGATATGATGGTGGCTTTGGTTCTGGTCAAGCAGGAACTCGATTTGGTGGAAAGTCTCGCCCCAGTGGTTTTGGAGGATTTGGTAGTTCAAACCAATCTGGCAGTTTTAGAAATTTTGGGTCGGGTCAATCTGGTGCATATGGTGACAGAATGTCAAGCCAAAGCAGCACCTTTGGTAATTTACATGGTGGTGGTTTCGGTGCTTTTGGGAATAATCCAAATGTTGACAGTTACAACAGAGGAAAGGCTTTTTAA
Predicted protein sequences of Glyma08g41510
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g41510.1 sequence type=predicted peptide gene model=Glyma08g41510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTSSVILRRSSSVISRRFFAALASVEPLPRRFPADRYGVSGDGSRTIHTNPGPLNFRASAVPRAAQFAVERDYSNYEEVSGANSDEGLEIANLGIAPQIVDALAKKGIAKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDSIIQFNAKHGQGRHPLALVLAPTRELARQVEKEFNEAAPNLAMICLYGGMPIQQQMRQLNYGVDIAVGTPGRIIDLLNRGALNLKNVKFVVLDEADQMLQVGFQEAVEKILEGLSPNRQTLMFSATMPSWIKNITRNYLNNPLTIDLVGDSDQKLADGISLYSIVSDSYTKAGILAPLITEHANGGKCIVFTQTKRDADRLSYVMAKSLRCEALHGDISQTQREKTLAGFRNNNFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGSAILVYTQGQSRAVQTIQRDVGCKFTELPKIDAPAGSAEMFTGMGGGRSGSMRDRQSGGTGFGRNPGLGRSGSYGNSGFGRSSYGNSSEMNRYDGGFGSGQAGTRFGGKSRPSGFGGFGSSNQSGSFRNFGSGQSGAYGDRMSSQSSTFGNLHGGGFGAFGNNPNVDSYNRGKAF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
