Glyma08g41460 - SoyBase

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Report for Sequence Feature Glyma08g41460

Feature Type:	gene_model
Chromosome:	Gm08
Start:	41432225
stop:	41437903
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g41460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G13360	AT	Annotation by Michelle Graham. TAIR10: alanine:glyoxylate aminotransferase \| chr2:5539417-5540902 REVERSE LENGTH=401	SoyBase	E_val: 0	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0030003	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis	SoyBase	N/A	ISS
GO:0070838	GO-bp	Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004760	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-pyruvate transaminase activity	SoyBase	N/A	ISS
GO:0008453	GO-mf	Annotation by Michelle Graham. GO Molecular Function: alanine-glyoxylate transaminase activity	SoyBase	N/A	ISS
GO:0030170	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding	SoyBase	N/A	ISS
GO:0050281	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-glyoxylate transaminase activity	SoyBase	N/A	ISS
KOG2862	KOG	Alanine-glyoxylate aminotransferase AGT1	JGI		ISS
PTHR21152	Panther	AMINOTRANSFERASE CLASS V	JGI		ISS
PTHR21152:SF7	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00266	PFAM	Aminotransferase class-V	JGI		ISS
UniRef100_C1IGP4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alanine:glyoxylate aminotransferase n=2 Tax=Phaseoleae RepID=C1IGP4_VIGRA	SoyBase	E_val: 0	ISS
UniRef100_C1IGP4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Alanine:glyoxylate aminotransferase n=2 Tax=Phaseoleae RepID=C1IGP4_VIGRA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g41460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g41460

Paralog	Evidence	Comments
Glyma18g14740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g41460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g302600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g41460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g41460

Limit To All Plant Sequences

>Glyma08g41460.2   sequence type=transcript   gene model=Glyma08g41460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGAATTTATTTAAGAATGATATCCTACGCATGCTTTGTGTTATTATTCTCTTCACTATAAAATTGGCTTTGGAAATGGAAAAAATCAAGTGGAGGTGATAGAGATTCTTTGGTGGGAAAAATCCAAGAGGTTTGAAATTTGAAGGCAGGGAAGATGGATTATTTCAATGCACCAGGAAGAAACCATCTCTTTGTTCCAGGGCCGGTTAACATTCCGGACCAGATCATCCGGGCCATGAACAGAAACAATGAGGACTACCGTTCTCCAGCAATTCCAGCTATGACAAAAACTTTGCTTGAGGATGTCAAGAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATCGAATTGTATCGTTCCTGATTGGCCAATTCAGCTTGCTTTGGATTGATCAGCAGCAACGCCTGAAGTTCAATGTTGATGTTGTTGAGAGTGAATGGGGCCATGGTGCTAAGCTTGATGTTCTGGAATCAAAGATTGCTTCAGATACTTCACACACTATAAAGGCAATTTGCATTGTTCACAATGAGACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTTGTGCTCTTGATTTCCGCATGGATGAATGGGGAGTTGATGTGGCAATAACTGGCTCCCAGAAGGCCCTTTCCCTTCCCACTGGGATAGGTATTGTGGTTGCAGGCCCTAAAGCTATTGAGGCCTCAAAACATGCTAAATCACTTAGAGTTTTCTTTGACTGGAAAGACTACCTCAAATTCTACCAGCTAGGAACCTATTGGCCATACACTCCTTCCATACATTTGCTGTATGGTCTGAGAGCTGCTCTTGATCTGATTTTTGAGGAAGGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTGGTACAGTGACACTGTGACTGCTGTTCTTGTTCCTGCTTACATTGATAGTACTGAAATAGTTAGGAGGGCATGGAAGAGATACAATTTGAGCTTAGGTCTTGGACTGAACAAAGTTGCTGGGAAGGTTTTCAGAATTGGACATCTTGGCCACTTGAATGAGTTGCAACTGTTGGGATGTCTAGCTGGTGTAGAGATGATACTCAAAGATGTGGGTTATCCTGTAAAGCTTGGAAGTGGAGTTGCTGCTGCCAGTGCATACTTACAGAACACTATTCCTATGATCCCTTCCAGGATTTGAGTCACAAATCATTCTTGTCTTTACTTCCTTTTTCTGCTCTTTCAGAAATTCTGTAAAATATATATTACCCTCTTTTACACTCCTTTGAAGATGAACGTACTTTCTACTTTCAGCTTTAATGCATTGCTTCTTTTATTGTCCTGTATATCAAAAATCATTGCATCTTATGACCTTATTTGTCACTGTGTTATGGTAATCAAATTCATCAGCAGGGGTTATTGGATTGCATATGGATACAAGAGAAATCCTAGCAACATACTCTTTGCACAACTTATTCTCTCCTATTGTGTGAAATTCATGTGGGTCTCACTAAATATATGAGTCGCATTTTCCATTTGGTGTGTTCCATTCCCAAACTAGAAGGACCTACATGAATTTCAATCAATAGGAAAGAGTTTATTGCCAAGAGATCATTAGAAATTGTGATACTAACACTTCTAATGTATACAATATAATGGTACCAATTAAAGACATTTATGAATATACTGTGCTAATTAGATATC

Coding sequences of Glyma08g41460

Limit To All Plant Sequences

>Glyma08g41460.1   sequence type=CDS   gene model=Glyma08g41460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTATTTCAATGCACCAGGAAGAAACCATCTCTTTGTTCCAGGGCCGGTTAACATTCCGGACCAGATCATCCGGGCCATGAACAGAAACAATGAGGACTACCGTTCTCCAGCAATTCCAGCTATGACAAAAACTTTGCTTGAGGATGTCAAGAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATCGAATTGTATCGTTCCTGATTGGCCAATTCAGCTTGCTTTGGATTGATCAGCAGCAACGCCTGAAGTTCAATGTTGATGTTGTTGAGAGTGAATGGGGCCATGGTGCTAAGCTTGATGTTCTGGAATCAAAGATTGCTTCAGATACTTCACACACTATAAAGGCAATTTGCATTGTTCACAATGAGACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTTGTGCTCTTGATTTCCGCATGGATGAATGGGGAGTTGATGTGGCAATAACTGGCTCCCAGAAGGCCCTTTCCCTTCCCACTGGGATAGGTATTGTGGTTGCAGGCCCTAAAGCTATTGAGGCCTCAAAACATGCTAAATCACTTAGAGTTTTCTTTGACTGGAAAGACTACCTCAAATTCTACCAGCTAGGAACCTATTGGCCATACACTCCTTCCATACATTTGCTGTATGGTCTGAGAGCTGCTCTTGATCTGATTTTTGAGGAAGGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTGGTACAGTGACACTGTGACTGCTGTTCTTGTTCCTGCTTACATTGATAGTACTGAAATAGTTAGGAGGGCATGGAAGAGATACAATTTGAGCTTAGGTCTTGGACTGAACAAAGTTGCTGGGAAGGTTTTCAGAATTGGACATCTTGGCCACTTGAATGAGTTGCAACTGTTGGGATGTCTAGCTGGTGTAGAGATGATACTCAAAGATGTGGGTTATCCTGTAAAGCTTGGAAGTGGAGTTGCTGCTGCCAGTGCATACTTACAGAACACTATTCCTATGATCCCTTCCAGGATTTGA

>Glyma08g41460.2   sequence type=CDS   gene model=Glyma08g41460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTATTTCAATGCACCAGGAAGAAACCATCTCTTTGTTCCAGGGCCGGTTAACATTCCGGACCAGATCATCCGGGCCATGAACAGAAACAATGAGGACTACCGTTCTCCAGCAATTCCAGCTATGACAAAAACTTTGCTTGAGGATGTCAAGAAGATTTTCAAGACCACTACTGGAACCCCATTTCTCATCCCTACAACTGGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATCGAATTGTATCGTTCCTGATTGGCCAATTCAGCTTGCTTTGGATTGATCAGCAGCAACGCCTGAAGTTCAATGTTGATGTTGTTGAGAGTGAATGGGGCCATGGTGCTAAGCTTGATGTTCTGGAATCAAAGATTGCTTCAGATACTTCACACACTATAAAGGCAATTTGCATTGTTCACAATGAGACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTTGTGCTCTTGATTTCCGCATGGATGAATGGGGAGTTGATGTGGCAATAACTGGCTCCCAGAAGGCCCTTTCCCTTCCCACTGGGATAGGTATTGTGGTTGCAGGCCCTAAAGCTATTGAGGCCTCAAAACATGCTAAATCACTTAGAGTTTTCTTTGACTGGAAAGACTACCTCAAATTCTACCAGCTAGGAACCTATTGGCCATACACTCCTTCCATACATTTGCTGTATGGTCTGAGAGCTGCTCTTGATCTGATTTTTGAGGAAGGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTGGTACAGTGACACTGTGACTGCTGTTCTTGTTCCTGCTTACATTGATAGTACTGAAATAGTTAGGAGGGCATGGAAGAGATACAATTTGAGCTTAGGTCTTGGACTGAACAAAGTTGCTGGGAAGGTTTTCAGAATTGGACATCTTGGCCACTTGAATGAGTTGCAACTGTTGGGATGTCTAGCTGGTGTAGAGATGATACTCAAAGATGTGGGTTATCCTGTAAAGCTTGGAAGTGGAGTTGCTGCTGCCAGTGCATACTTACAGAACACTATTCCTATGATCCCTTCCAGGATTTGA

Predicted protein sequences of Glyma08g41460

Limit To All Plant Sequences

>Glyma08g41460.1   sequence type=predicted peptide   gene model=Glyma08g41460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDYFNAPGRNHLFVPGPVNIPDQIIRAMNRNNEDYRSPAIPAMTKTLLEDVKKIFKTTTGTPFLIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLKFNVDVVESEWGHGAKLDVLESKIASDTSHTIKAICIVHNETATGVTNDLAKVRQILDSYQHPALLIVDGVSSICALDFRMDEWGVDVAITGSQKALSLPTGIGIVVAGPKAIEASKHAKSLRVFFDWKDYLKFYQLGTYWPYTPSIHLLYGLRAALDLIFEEGLENVIARHSRLGKATRLAVEAWGLKNCTQKEEWYSDTVTAVLVPAYIDSTEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNTIPMIPSRI*

>Glyma08g41460.2   sequence type=predicted peptide   gene model=Glyma08g41460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDYFNAPGRNHLFVPGPVNIPDQIIRAMNRNNEDYRSPAIPAMTKTLLEDVKKIFKTTTGTPFLIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLKFNVDVVESEWGHGAKLDVLESKIASDTSHTIKAICIVHNETATGVTNDLAKVRQILDSYQHPALLIVDGVSSICALDFRMDEWGVDVAITGSQKALSLPTGIGIVVAGPKAIEASKHAKSLRVFFDWKDYLKFYQLGTYWPYTPSIHLLYGLRAALDLIFEEGLENVIARHSRLGKATRLAVEAWGLKNCTQKEEWYSDTVTAVLVPAYIDSTEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNTIPMIPSRI*

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