Glyma08g41390 - SoyBase

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Report for Sequence Feature Glyma08g41390

Feature Type:	gene_model
Chromosome:	Gm08
Start:	41375073
stop:	41386642
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g41390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19420	AT	Annotation by Michelle Graham. TAIR10: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain \| chr5:6547945-6552866 REVERSE LENGTH=1105	SoyBase	E_val: 0	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003682	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chromatin binding	SoyBase	N/A	ISS
GO:0005543	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0008536	GO-mf	Annotation by Michelle Graham. GO Molecular Function: Ran GTPase binding	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG1427	KOG	Uncharacterized conserved protein, contains RCC1 domain	JGI		ISS
PTHR22870	Panther	REGULATOR OF CHROMOSOME CONDENSATION	JGI		ISS
PTHR22870:SF25	Panther	REGULATOR OF CHROMOSOME CONDENSATION-RELATED	JGI		ISS
PF00415	PFAM	Regulator of chromosome condensation (RCC1) repeat	JGI		ISS
PF01363	PFAM	FYVE zinc finger	JGI		ISS
PF08381	PFAM	Disease resistance/zinc finger/chromosome condensation-like region	JGI		ISS
UniRef100_B9SM24	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ran GTPase binding protein, putative n=1 Tax=Ricinus communis RepID=B9SM24_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KXU8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KXU8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g41390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g41390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g302000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g41390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g41390

Limit To All Plant Sequences

>Glyma08g41390.1   sequence type=CDS   gene model=Glyma08g41390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCACGCACTGATACGATGACAACGACGATGACTGCGGATCTTAATAGAACTGGTCCGGTGGAAAGAGACATTGAGCAGGCTATTACTGCTTTAAAAAAAGGGGCTTACTTGCTCAAGTATGGAAGGAGAGGGAAGCCCAAGTTTTGTCCCTTTCGGCTTTCCAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAAGAAGAGAAGCGCCTTAAACTAACTAATGTTTCTAGGATTATATCTGGACAACGCACGCCAATCTTTCAAAGATATCCGCGGCCTGAGAAGGAGTACCAGTCGTTTTCTCTCATTTACAATGATAGATCATTAGACTTGATTTGTAAGGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGATTGAAAGCGTTAATTTCTCGCGGCCATCACTGGAAGTGGAGACCAGAGTCAAGAACTGATGGTATTCCGTCTGAAGCTAATAGTCCTCGAACATACACTAGAAGAAGTTCTCCCTTGAATTCTCCATTTGGTAGTAATGAAAGCTTGCAAAAGGATAGTGGGGATCATCTTCGCCTTCATAGCCCATATGAAAGCCCCCCTAAGAATGGTTTGGATAAAGCATTTTCTGATGTGGTTTATTATCCTATTCCTCCAATGGGTTTCTTCCCTCCAGATTCTGCCAGTGGTTCGGTCCACTCTGTGTCATCAGGAGGATCAGATAGCATGCATGGTCAAATGAAGACAATGCCTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGCTCATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTACTCGGTGGTGGGGCTCACCATGTTGGGAGTAATTTTGGTGTCAAAATGGACTCTCTGTTGCCCAAAGCCTTGGAATCAGCAGTAGTTCTTGATGTACAGAATATTGCTTGTGGTGGGGAACATGCTGCCATGGTGACCAAACAAGGTGAAGTTTTTTCCTGGGGGGGAGAATCAGGAGGAAGGCTTGGACATGGAGTTGATTCTGATGTTCCCCATCCAAAGCTTATTGAATCTCTAAGTAATACAAATATTGAACTTGTAGCTTGTGGGGAGTATCATACATGTGCTGTGACACTTTCTGGTGATCTTTATACATGGGGTGATGGCACTTACAATTATGGTCTTCTGGGGCATGGAAATCAGGTGAGCCACTGGGTCCCAAAAAGAGTAAATGGCCCTTTGGAGGGCATACATGTTTCATCTATTTCTTGTGGTCCATGGCACACTGCTGTTGTTACCTCTTCGGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTTGGTCATGGAGACCGAAAAAGTGTTTCCTTGCCTAGGGAAATAGAGTCCCTGAAAGGTCTTCGTACTGTGCAGGCTGCTTGTGGTGTTTGGCATACTGCTGCTGTTGTGGAGGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACATGGGGCGATGGAGACAAAGGTCGACTTGGACATGGTGACAAGGAATCAAAACTTGTTCCCACCCGTGTTGTGACTCTTGATGAACCTAATTTTTGTCAAGTTGCTTGTGGTCATAGTATGACTGTAGCACTTTCTAGATTAGGCCATGTCTATACAATGGGCAGTTGTGTCTATGGCCATTTGGGAAATACTCAAGCTGATGGGAAGCTACCAACCCCTGTCGAAGGAAAGCTTTCAAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCAGTTTTAACTTCAAGGACTGAAGTTTTCACATGGGGGAAGGGTGCAAATGGTTGTTTAGGCCATGGGGATACTAATGATAGAAACACCCCAACATTAGTAGAAGCGCTGAAAGACAAACAAGTAAAAAGTATTGCTTGTGGTACAAATTTCACTGCAGCTATATGCCTGCATAAGTGGGTATCTGGTGTTGACCAGTCCATGTGTTCTGGCTGCCGTGTGCCATTCAACTTCAAAAGGAAACGCCACAATTGTTATAATTGTGGACTTGCTTTTTGTCATTCATGCAGTAATAAGAAATCTGTTAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAAATAAGGAAAACTACAGAAACCGATTCTTCATCTCAGGCTTCTATGAGCAGAAGAGGAAGTGTTAATCAGGGGTCACTTGAGTTTAATGGTAAGGATGATAAATTGGATTCCAGATCTCATAATCAACTTGCCAGGTTTTCTTCAATGGAATCCTTGAAACAAGTGGACAGCAGATCTTCAAAGAAAAACAAAAAATTGGAATTCAACAGTAGCCGTGTCTCACCTGCTCCAAATGGTGGTTCACAGTGGGGAGCAATGAATATTTCTAAATCTTTTAATCCTGTTTTTGGATCATCGAAGAAATTTTTTTCAGCTTCTGTTCCTGGGTCTAGAATTGTTTCCCGGGCAACATCCCCAATATCTAGACGACCTAGTCCACCCCGTTCAACTACTCCAACCCCAACACTGGGGGGACTTTCATCGCCAAAGATAGTTGTGGATGATGCTAAGAGAATCAATGATAACCTCAGTCAGGAGGTTGTTAAATTAAGATCACAGGTGGAAAACCTGACTCGGAAAGCCCAGCTTCAAGAAGTTGAGTTGGAAAGAACAACTAAACAGTTAAAAGAAGCAATAGCAATTGCAAGCGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCACTCACTGCCCAGTGGAAGGACATGGCTGAGAGGCTACCTGTAGGAGCATCTAGGAATGCCAGATCACCACCCTCTCTTGCTTCCTTTGGCTTAAATCCTGGTTCCAATGACCTTACTAATGCTTCCTTTGATCGATTGAATATTCAAGCAACAAGCCCAGAATCAGACTTAAATGGATCCACTAACCAGTTACTTTCAAATGGATCAAGCACCATCACCAACCGGAGTGCAGGTCACATTAAACACAGTCAATCAGATGCAACTAGCAGAAATGGGAGCAAAACAAAGGATAATGAGACTGAATGGGTTGAGCAAGATGAACCTGGTGTATATATTACTCTTACCTCCTTACCAGGAGGTGTAATAGATCTTAAAAGAGTTCGCTTCAGCCGGAAGCGGTTTAGTGAGAAACAAGCAGAACAATGGTGGGCTGAGAATCGGGCAAGAGTATATGAACAATACAACGTGCACATGATTGACAAGTCGACAATTGGCGTTGGGAGTGAGGACCTGGCTCATTGA

Predicted protein sequences of Glyma08g41390

Limit To All Plant Sequences

>Glyma08g41390.1   sequence type=predicted peptide   gene model=Glyma08g41390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRTDTMTTTMTADLNRTGPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKRLKLTNVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRGHHWKWRPESRTDGIPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKAFSDVVYYPIPPMGFFPPDSASGSVHSVSSGGSDSMHGQMKTMPMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGAHHVGSNFGVKMDSLLPKALESAVVLDVQNIACGGEHAAMVTKQGEVFSWGGESGGRLGHGVDSDVPHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLGHGDRKSVSLPREIESLKGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPTRVVTLDEPNFCQVACGHSMTVALSRLGHVYTMGSCVYGHLGNTQADGKLPTPVEGKLSKSFVEEIACGAYHVAVLTSRTEVFTWGKGANGCLGHGDTNDRNTPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRVPFNFKRKRHNCYNCGLAFCHSCSNKKSVKASMAPNPNKPYRVCDNCFNKIRKTTETDSSSQASMSRRGSVNQGSLEFNGKDDKLDSRSHNQLARFSSMESLKQVDSRSSKKNKKLEFNSSRVSPAPNGGSQWGAMNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLSSPKIVVDDAKRINDNLSQEVVKLRSQVENLTRKAQLQEVELERTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQWKDMAERLPVGASRNARSPPSLASFGLNPGSNDLTNASFDRLNIQATSPESDLNGSTNQLLSNGSSTITNRSAGHIKHSQSDATSRNGSKTKDNETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVHMIDKSTIGVGSEDLAH*

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