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Report for Sequence Feature Glyma08g41310

Feature Type:gene_model
Chromosome:Gm08
Start:41299137
stop:41299781
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g41310
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G12340AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3992948-3993610 REVERSE LENGTH=220 SoyBaseE_val: 4.00E-50ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1KXU3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXU3_SOYBN SoyBaseE_val: 1.00E-155ISS
UniRef100_Q10L85UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q10L85_ORYSJ SoyBaseE_val: 3.00E-32ISS

Expression Patterns of Glyma08g41310
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g41310 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g301500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g41310
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g41310
>Glyma08g41310.1   sequence type=CDS   gene model=Glyma08g41310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAATGCAGCCGTGACTCCATGCTTTCATCCAAAGAATTCATCCTTATCGTCGTCGTCGAAACTTATTTTTTGGGATGGCACCATGAGATCTCTAAAGGGTAAGCACATTGCTAGTGAGATCATGTTTGAGTTCCCAAACAAGGTAGTTTGCCATGCAGATTCTTTCTTCATTGGACACCCAATTCCTGCTTTAGCCTTAGAGGATGAGCTCATTCAAGGTGAAGCCTATTTTGTTCTCCCAATTGATAGCTTGATCACATGCAAAACCCTATCTGTGTCTTCACTCTTGTCCTTGGGATCACACACTAATAACAAGTCCACCATCAAATTTGGGGAGTGTACTTTTGAGTACTTGAAAGGTTCCAATGGAAGGGTGTTGATAAAGGTCATGCCTGAGTTCATCACAAGGCTAATCAATAGAAGTAAAAGACCATGTTGCCCCAGCATTAATATTGACAACAACTTCCTATGCAGCACTCCTGAGTTGAGAAAACACTATCAAATGCTTGTGAAGCCTAAGGACCAGGTTTGGTCACCTAAGCTTGAAACCATTTCGGAATACAAAGTTAAGTTTTCACCGTGTAGATTTATAGGTTTAGAAAGGAAAGAAAAAGAGAAGGCAGAGGTTTTTATCTACTAG
Predicted protein sequences of Glyma08g41310
>Glyma08g41310.1   sequence type=predicted peptide   gene model=Glyma08g41310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNAAVTPCFHPKNSSLSSSSKLIFWDGTMRSLKGKHIASEIMFEFPNKVVCHADSFFIGHPIPALALEDELIQGEAYFVLPIDSLITCKTLSVSSLLSLGSHTNNKSTIKFGECTFEYLKGSNGRVLIKVMPEFITRLINRSKRPCCPSINIDNNFLCSTPELRKHYQMLVKPKDQVWSPKLETISEYKVKFSPCRFIGLERKEKEKAEVFIY*






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