Glyma08g41230 - SoyBase

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Report for Sequence Feature Glyma08g41230

Feature Type:	gene_model
Chromosome:	Gm08
Start:	41253271
stop:	41259526
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g41230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14270	AT	Annotation by Michelle Graham. TAIR10: CAAX amino terminal protease family protein \| chr1:4875099-4877195 REVERSE LENGTH=353	SoyBase	E_val: 5.00E-137	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
PF02517	PFAM	CAAX amino terminal protease family	JGI		ISS
UniRef100_B9S8V7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Prenyl-dependent CAAX protease, putative n=1 Tax=Ricinus communis RepID=B9S8V7_RICCO	SoyBase	E_val: 7.00E-148	ISS
UniRef100_I1KXT7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXT7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g41230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g41230

Paralog	Evidence	Comments
Glyma18g15030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g41230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g300800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g41230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g41230

Limit To All Plant Sequences

>Glyma08g41230.2   sequence type=transcript   gene model=Glyma08g41230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAGCATCATAATTCCATCCAACATTTTTCAAGTACTTAGAAGATTTCAAGTTTAACACTTCAACCGAAGTGTAGTGACGAGCCTTATCTCAAAAGTTCTTCTTTTGCAAACACTGTCCAATTTACAAACTCTCCACCTCACATAATGGTTTCAAATTCAATGTTAATGGCTTCTTCTCTGCATTCACCTTGCACCCTCTTCAGTTCCCACAAGCTTTGTTCTTCTTCGATCAAAACCATCTCAAAACAAAGCCACACATTTCTCCATAGAAATCCCTCTCTCCATCGCCCTTTGAGTTTGGGTTCCAAAAGGGTTCTTCCTTCAGTTTGCTTCTTTAATACTGGAGACAAATCTGACTCCAAGGAATCGGGATGGCCTATTCTCAGGCGATGGGAGGTGCCTTGGCAATGGCAAACAGTTTCACTGACCTCTCTTGCCTGTGGATTGGGTTTTGTGTTGACAGGTTTGACTGAAGCAATTGCCTTACCATATCTCGGGATCAAACCTGATGTGCTAAGTTTAGATGACAAGGCAGAGATACTTTTATTCGATCAGAGCATCACAACTGCTGTTGTACTTGGAATCATATATAGTGTTGCCAACACTTTCCAGCCACTTCCTGAAGACTTCTTCAAATACGATTTGAGGGAACCTTTCAATCTTCAAAAGGGTTGGCTTTTGTGGGCTGGAATTGGACTTGCTGGTGCCATACTTGCCATTTCATTGACCGGAGTTGCTGTGTCTTTCTTCAATGGAGAAACCCCACAAAGAGAGACTGATGCTCTTGTTCGCTTGCTTCCGTTAATTGGATCTTCAAATCTCAGCACTGCCTGCTTGGTGGGCATCACAGGTGTTCTTGCTCCACTCCTTGAGGAGACTGTTTTTCGGGGATTTTTTATGACTTCCCTCACTAAGTGGGTTCCTACGCCAGTTGCTGTTGTCATTAGTGCTGCTGTTTTTGCCCTTGCACATCTCACTCCTGGAGAATTTCCCCAATTGTTTGTTCTAGGGACTGCTTTGGGGTTTTCATATGCTCAAACTCACAACCTTCTCACTCCCATCACTATCCATTCTTTTTGGAACTCAGGAGTTATATTATTTCTTACTTTTCTGCAGCTTCAAGGGTACGATATCAGAGAATTATTGCAGGCAACTTGATGGAAAAAATTTCTCCTTTGCATGGATGTGGAGCATCATGTACAGTATATAATACAAATCCATTTCTTTGCTTATCTGCGCTCCTTTCCGTGCTGTAAAACATAATCAGATTGTTCTTTGGAACAGTGAAGTAGGTAATAATAATTTACCATGACAGTTAAAATATGCTATGCACTTAAAAATTTTCAGAGGCCCTGGTTGACAAGAAATAGGGCTTCGTTTGGATATCCAATGTTGAACAGAGTAGAGGAGATCAAAATGGAATAGAATAAATGCATTATTCTTTCGGGTAAAATATGTTTCTAGTTTTTGTATTTTTGGTAAAATTTAGTTTTAGTCTTCAAACTTCAACTTCGATAAATTTGGTTTCTGAACTTTACTAAAAACAATAATTTCCATCACTTCTCATAGTGAAAACCATGTGATGAGGGACGGAAATCATTGTTTTTTTTTTTTTGAAGTTTAGGGATCAAATTGATTAAAGTTAAAGTATGATGACTAATACCAAATTTCACTAAAAGAGCAAAACTAAACATATTTTACCATTTTTCCCCATCAAATGTGTTTGAATATCAATTCAGCTAAACTAAATCGACGTTCAATGCTAATCTAACACTGATATTGTTGTTACGTTTGTGCATTGGAAAGTGAAAATCTCGGAGGCCAATCAAATGGGATTCCA

Coding sequences of Glyma08g41230

Limit To All Plant Sequences

>Glyma08g41230.1   sequence type=CDS   gene model=Glyma08g41230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCAAATTCAATGTTAATGGCTTCTTCTCTGCATTCACCTTGCACCCTCTTCAGTTCCCACAAGCTTTGTTCTTCTTCGATCAAAACCATCTCAAAACAAAGCCACACATTTCTCCATAGAAATCCCTCTCTCCATCGCCCTTTGAGTTTGGGTTCCAAAAGGGTTCTTCCTTCAGTTTGCTTCTTTAATACTGGAGACAAATCTGACTCCAAGGAATCGGGATGGCCTATTCTCAGGCGATGGGAGGTGCCTTGGCAATGGCAAACAGTTTCACTGACCTCTCTTGCCTGTGGATTGGGGTGTGTTTTGAATAGCTGTTATGATTTCATATCAAACTTGAAATATTGCAAATGTTTGACTGAAGCAATTGCCTTACCATATCTCGGGATCAAACCTGATGTGCTAAGTTTAGATGACAAGGCAGAGATACTTTTATTCGATCAGAGCATCACAACTGCTGTTGTACTTGGAATCATATATAGTGTTGCCAACACTTTCCAGCCACTTCCTGAAGACTTCTTCAAATACGATTTGAGGGAACCTTTCAATCTTCAAAAGGGTTGGCTTTTGTGGGCTGGAATTGGACTTGCTGGTGCCATACTTGCCATTTCATTGACCGGAGTTGCTGTGTCTTTCTTCAATGGAGAAACCCCACAAAGAGAGACTGATGCTCTTGTTCGCTTGCTTCCGTTAATTGGATCTTCAAATCTCAGCACTGCCTGCTTGGTGGGCATCACAGGTGTTCTTGCTCCACTCCTTGAGGAGACTGTTTTTCGGGGATTTTTTATGACTTCCCTCACTAAGTGGGTTCCTACGCCAGTTGCTGTTGTCATTAGTGCTGCTGTTTTTGCCCTTGCACATCTCACTCCTGGAGAATTTCCCCAATTGTTTGTTCTAGGGACTGCTTTGGGGTTTTCATATGCTCAAACTCACAACCTTCTCACTCCCATCACTATCCATTCTTTTTGGAACTCAGGAGTTATATTATTTCTTACTTTTCTGCAGCTTCAAGGGTACGATATCAGAGAATTATTGCAGGCAACTTGA

>Glyma08g41230.2   sequence type=CDS   gene model=Glyma08g41230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCAAATTCAATGTTAATGGCTTCTTCTCTGCATTCACCTTGCACCCTCTTCAGTTCCCACAAGCTTTGTTCTTCTTCGATCAAAACCATCTCAAAACAAAGCCACACATTTCTCCATAGAAATCCCTCTCTCCATCGCCCTTTGAGTTTGGGTTCCAAAAGGGTTCTTCCTTCAGTTTGCTTCTTTAATACTGGAGACAAATCTGACTCCAAGGAATCGGGATGGCCTATTCTCAGGCGATGGGAGGTGCCTTGGCAATGGCAAACAGTTTCACTGACCTCTCTTGCCTGTGGATTGGGTTTTGTGTTGACAGGTTTGACTGAAGCAATTGCCTTACCATATCTCGGGATCAAACCTGATGTGCTAAGTTTAGATGACAAGGCAGAGATACTTTTATTCGATCAGAGCATCACAACTGCTGTTGTACTTGGAATCATATATAGTGTTGCCAACACTTTCCAGCCACTTCCTGAAGACTTCTTCAAATACGATTTGAGGGAACCTTTCAATCTTCAAAAGGGTTGGCTTTTGTGGGCTGGAATTGGACTTGCTGGTGCCATACTTGCCATTTCATTGACCGGAGTTGCTGTGTCTTTCTTCAATGGAGAAACCCCACAAAGAGAGACTGATGCTCTTGTTCGCTTGCTTCCGTTAATTGGATCTTCAAATCTCAGCACTGCCTGCTTGGTGGGCATCACAGGTGTTCTTGCTCCACTCCTTGAGGAGACTGTTTTTCGGGGATTTTTTATGACTTCCCTCACTAAGTGGGTTCCTACGCCAGTTGCTGTTGTCATTAGTGCTGCTGTTTTTGCCCTTGCACATCTCACTCCTGGAGAATTTCCCCAATTGTTTGTTCTAGGGACTGCTTTGGGGTTTTCATATGCTCAAACTCACAACCTTCTCACTCCCATCACTATCCATTCTTTTTGGAACTCAGGAGTTATATTATTTCTTACTTTTCTGCAGCTTCAAGGGTACGATATCAGAGAATTATTGCAGGCAACTTGA

Predicted protein sequences of Glyma08g41230

Limit To All Plant Sequences

>Glyma08g41230.1   sequence type=predicted peptide   gene model=Glyma08g41230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSNSMLMASSLHSPCTLFSSHKLCSSSIKTISKQSHTFLHRNPSLHRPLSLGSKRVLPSVCFFNTGDKSDSKESGWPILRRWEVPWQWQTVSLTSLACGLGCVLNSCYDFISNLKYCKCLTEAIALPYLGIKPDVLSLDDKAEILLFDQSITTAVVLGIIYSVANTFQPLPEDFFKYDLREPFNLQKGWLLWAGIGLAGAILAISLTGVAVSFFNGETPQRETDALVRLLPLIGSSNLSTACLVGITGVLAPLLEETVFRGFFMTSLTKWVPTPVAVVISAAVFALAHLTPGEFPQLFVLGTALGFSYAQTHNLLTPITIHSFWNSGVILFLTFLQLQGYDIRELLQAT*

>Glyma08g41230.2   sequence type=predicted peptide   gene model=Glyma08g41230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSNSMLMASSLHSPCTLFSSHKLCSSSIKTISKQSHTFLHRNPSLHRPLSLGSKRVLPSVCFFNTGDKSDSKESGWPILRRWEVPWQWQTVSLTSLACGLGFVLTGLTEAIALPYLGIKPDVLSLDDKAEILLFDQSITTAVVLGIIYSVANTFQPLPEDFFKYDLREPFNLQKGWLLWAGIGLAGAILAISLTGVAVSFFNGETPQRETDALVRLLPLIGSSNLSTACLVGITGVLAPLLEETVFRGFFMTSLTKWVPTPVAVVISAAVFALAHLTPGEFPQLFVLGTALGFSYAQTHNLLTPITIHSFWNSGVILFLTFLQLQGYDIRELLQAT*

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