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Report for Sequence Feature Glyma08g41200

Feature Type:gene_model
Chromosome:Gm08
Start:41223007
stop:41225224
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g41200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G02950AT Annotation by Michelle Graham. TAIR10: phytochrome kinase substrate 1 | chr2:855149-856468 REVERSE LENGTH=439 SoyBaseE_val: 8.00E-39ISS
GO:0009585GO-bp Annotation by Michelle Graham. GO Biological Process: red, far-red light phototransduction SoyBaseN/AISS
GO:0009637GO-bp Annotation by Michelle Graham. GO Biological Process: response to blue light SoyBaseN/AISS
GO:0009638GO-bp Annotation by Michelle Graham. GO Biological Process: phototropism SoyBaseN/AISS
GO:0009958GO-bp Annotation by Michelle Graham. GO Biological Process: positive gravitropism SoyBaseN/AISS
GO:0010017GO-bp Annotation by Michelle Graham. GO Biological Process: red or far-red light signaling pathway SoyBaseN/AISS
GO:0010114GO-bp Annotation by Michelle Graham. GO Biological Process: response to red light SoyBaseN/AISS
GO:0010155GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of proton transport SoyBaseN/AISS
GO:0010218GO-bp Annotation by Michelle Graham. GO Biological Process: response to far red light SoyBaseN/AISS
GO:0046777GO-bp Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
UniRef100_G7LA55UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phytochrome kinase substrate n=1 Tax=Medicago truncatula RepID=G7LA55_MEDTR SoyBaseE_val: 7.00E-135ISS
UniRef100_UPI0002338830UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338830 related cluster n=1 Tax=unknown RepID=UPI0002338830 SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g41200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g41200
ParalogEvidenceComments
Glyma18g15180 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g41200 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g300500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g41200
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g41200
>Glyma08g41200.2   sequence type=CDS   gene model=Glyma08g41200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTAATACCATATCATCCACAACCAACAGCAACTTCTATCATCAGTTGCATACTTTCAACTATGATGACAGCAACAATAATCACCTCTATGATGCCACTTTCTCTCCATATTTGAATGGCAACAATGAAGGGACCACTATTGTAGGAAGGCTTGGTGAACCAAGCCAAAAGCTTAACCCTTTGAAGTCCCCTCTTCAAAAGCTAGAAAAGAAAGAAGAAAATGGAGAAATAGGAGTGTTTGGTGCTGAAAAATACTTCAATGTGGAAGTTGAGACCCCAAGATCTACCACCAGCAGCATAGCCACTCCAAAGTACCTGCACCGCCAGAGAGATGAACCAATGGCTATAATAGCAACTAGAAAGCACGGACTTCCTTATGGAACTCCAAGCATTCGATCTGAATCAACAACTTGCAACAGCCAAAGTGCACTACTTCAAAGTGGAATGATGATGAGGAATTCTTTAAGAAACAAAAAGGACAACAACAAGAAGGGTCATCAAGCCAAGAGTGTGCTAGCTGGCCTTAGCTTCAAATGCTCTTGTTCTGACAAGGATTCTGTTGATGCAGGTGAAATCAGTTTCAGCAAACCTGCCACTTATGGTGCAGTTCATGACAAAAAAACTAGAAGAAAGCTTGTGGATATTGCTGCTCTTGATGCTAGCCATTCAATCAAAATAAGCAAGCCTAATGCAGAACTCTTGAAAATCAACAATGTTTACTTCCAAACGCAAGAGGGTACTTTTGGGAATAGGCAAAAAAGCAGCTTGGCATTCTCATCCTTGAGTTCTGCCTCAGGAAACCAAAACCATATTCTTGTCACAAAAATGCAACAACAACAACTAGATGAAGTAGTAGAAGCTGAGAAGCCAAGAAACTCAATAGAGGTGTTTGGCTCCCCAACAATACTGAAAAACAAGCTCAAGTCATTGAGCTTTGATAGAACCACAACAAGGTTTGCAATGGCCTCATCAAGAGATGGCACTCCTAGACTATTATTGGAGGAAATTGATCACTCAAACTACATCAATGATGCTGCTAGTGATGCAAGTTCAGACTTGTTTGAGATTGAGAGCATAAAGAGCAAAACCAACCCTTTTCTTGCAAGGCAAACATCAGATGCTGCTGCTTCAAGCTGTGTGAGCCCCACAAATGGCTACGCACCAAGTGAGGCTAGCATAGAGTGGAGTGTGGCCACTGCCAGTGCTGCAGTTATGTCAGACTGTGAAGAACAGATGTCTGAGGTAACCATAAGAAGTCCAATAAGAACAACAACTAAAACAACATTTGCTAATGGAAAAGCAAAATCTACCACCAAAGAAGTTCAGAGAATTAGGCGCCCTAGCATGTTGTTGGGTTGCAAGAACCACAAATCTGTTAGAGTTGCTGGTGATGCTTATATAACATATGAGAATCCAAGTTCTACACCAAAACTTAGGAGCAGAACTAATAGTTCCTCTCAGGTGGCAAGGTTTCCTTCAGAGACAAAACTGGGAAATTTTGGTGCAAAACATGGACAACATCATCATCATGCTTATGCCACACCATCACCACTGCAGCACTCTCACTCACCACATGCCTCAAAACTACTTTACATTTAG
Predicted protein sequences of Glyma08g41200
>Glyma08g41200.2   sequence type=predicted peptide   gene model=Glyma08g41200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNTISSTTNSNFYHQLHTFNYDDSNNNHLYDATFSPYLNGNNEGTTIVGRLGEPSQKLNPLKSPLQKLEKKEENGEIGVFGAEKYFNVEVETPRSTTSSIATPKYLHRQRDEPMAIIATRKHGLPYGTPSIRSESTTCNSQSALLQSGMMMRNSLRNKKDNNKKGHQAKSVLAGLSFKCSCSDKDSVDAGEISFSKPATYGAVHDKKTRRKLVDIAALDASHSIKISKPNAELLKINNVYFQTQEGTFGNRQKSSLAFSSLSSASGNQNHILVTKMQQQQLDEVVEAEKPRNSIEVFGSPTILKNKLKSLSFDRTTTRFAMASSRDGTPRLLLEEIDHSNYINDAASDASSDLFEIESIKSKTNPFLARQTSDAAASSCVSPTNGYAPSEASIEWSVATASAAVMSDCEEQMSEVTIRSPIRTTTKTTFANGKAKSTTKEVQRIRRPSMLLGCKNHKSVRVAGDAYITYENPSSTPKLRSRTNSSSQVARFPSETKLGNFGAKHGQHHHHAYATPSPLQHSHSPHASKLLYI*






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