Report for Sequence Feature Glyma08g41160
Feature Type: gene_model
Chromosome: Gm08
Start: 41189305
stop: 41190147
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g41160
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G24090 AT
Annotation by Michelle Graham. TAIR10: chitinase A | chr5:8143805-8145153 REVERSE LENGTH=302
SoyBase E_val: 6.00E-78 ISS
GO:0005975 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process
SoyBase N/A ISS
GO:0009409 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cold
SoyBase N/A ISS
GO:0009611 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to wounding
SoyBase N/A ISS
GO:0009642 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to light intensity
SoyBase N/A ISS
GO:0009651 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to salt stress
SoyBase N/A ISS
GO:0010228 GO-bp
Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem
SoyBase N/A ISS
GO:0016926 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein desumoylation
SoyBase N/A ISS
GO:0042631 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation
SoyBase N/A ISS
GO:0050665 GO-bp
Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0004553 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds
SoyBase N/A ISS
GO:0043169 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cation binding
SoyBase N/A ISS
PF00704 PFAM
Glycosyl hydrolases family 18
JGI ISS
UniRef100_I1N156 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N156_SOYBN
SoyBase E_val: 2.00E-138 ISS
UniRef100_Q6XD74 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Class III chitinase n=2 Tax=Medicago truncatula RepID=Q6XD74_MEDTR
SoyBase E_val: 2.00E-128 ISS
Expression Patterns of Glyma08g41160
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma08g41160 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g300300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g41160
Coding sequences of Glyma08g41160
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g41160.2 sequence type=CDS gene model=Glyma08g41160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCACTGAAATCAGCAATCTCAGTCACATTCTTGTGCTTAGTCTTGTTAGCACTAGGAAATGAATGGCAACTAGGCACGCTGGACGAGGCTTGTGCCACAGGGAACTATGACTATGTGATCATAGCCTTTTTGCCAACCCTTGGCGATGGCCAAACTCCTATGATTAACCTTGCAGGCCATTGTGATCCATACAGTAAAGGATGCACTGGCTTAAGCTCGGACATTGAGTCCTGCCAAGCCAAAGGCATCAAGGTGTTGCTCTCTTTAGGAGGAGGTGCAGGAAGCTACTCAATTGCATCAACTCAAGATGCAAGCCAATTGTCTTCTCGTCCTCTTGGCCCCGCCATTCTAGATGACATCGACTTTGACATTGAGGATGGATCAAACCAGCACTGGGGTGATCTTGCCAAGTTCCTTAAAGGGTATGGCATGGCCAAGCAAGGCAAGCAAGCGTTCATAACTGCAGCACCTCAGTGCCCATTTCCTGATGCTTGGATTGGAAATGCCCTCACAACAGGCCTTTTTGACATTGTTTGTGTCCAATTCTACAACAACCCTCCTTGCCAATACAATTCTGGGGCAATTACTGGAAGTGGTTTCATTCCTTCTGCTGATCTTATTTCCAAGGTGCTTCCAGCCATTAAGGGTTCTGCTAAATATGGAGGTGTTATGATGTGGTCTAGGTATTATGATGCTCAAAGTGGATATAGCTCCTCCATCAGGAGCCATGTGTAA
Predicted protein sequences of Glyma08g41160
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g41160.2 sequence type=predicted peptide gene model=Glyma08g41160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MALKSAISVTFLCLVLLALGNEWQLGTLDEACATGNYDYVIIAFLPTLGDGQTPMINLAGHCDPYSKGCTGLSSDIESCQAKGIKVLLSLGGGAGSYSIASTQDASQLSSRPLGPAILDDIDFDIEDGSNQHWGDLAKFLKGYGMAKQGKQAFITAAPQCPFPDAWIGNALTTGLFDIVCVQFYNNPPCQYNSGAITGSGFIPSADLISKVLPAIKGSAKYGGVMMWSRYYDAQSGYSSSIRSHV*