Glyma08g41100 - SoyBase

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Report for Sequence Feature Glyma08g41100

Feature Type:	gene_model
Chromosome:	Gm08
Start:	41139743
stop:	41140785
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g41100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G24090	AT	Annotation by Michelle Graham. TAIR10: chitinase A \| chr5:8143805-8145153 REVERSE LENGTH=302	SoyBase	E_val: 7.00E-112	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009642	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light intensity	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0016926	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein desumoylation	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0050665	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
PF00704	PFAM	Glycosyl hydrolases family 18	JGI		ISS
UniRef100_I1KXS7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KXS7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6XD74	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Class III chitinase n=2 Tax=Medicago truncatula RepID=Q6XD74_MEDTR	SoyBase	E_val: 3.00E-167	ISS

Expression Patterns of Glyma08g41100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g41100

Paralog	Evidence	Comments
Glyma18g15330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g41100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g299700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g41100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g41100

Limit To All Plant Sequences

>Glyma08g41100.1   sequence type=CDS   gene model=Glyma08g41100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTGAAATCACCTATCTCAGTCACATTCTTGTGCTTAGTCTTGTTAGCACTAGCAAATGGTTCTTATGCTGGCAAAATTACAACCTACTGGGGCCAGAATGGCGACGAGGGCACGCTGGCCGAGGCTTGCGCCACGGGGAACTATGACTATGTGATCATAGCCTTTTTGCCAACCTTTGGCAAAGGCCAAACTCCCATGATTAATCTTGCTGGTCACTGTGATCCTCATAGTAATGATGGATGCACTGGCTTAAGCTCAGACATCAAATCTTGTCAAGCCAAAGGCATCAAGGTATTGCTCTCTTTGAGAGGAGATGTTGGAAGCCCCTCAATTGATCCAAGCCAAGCAGCCACTTACCTTTGGAACAACTTCTTGGGGGGACACTCATCAACCACTCGTCGTCCTCTTGGCTCTGCCGTTCTTGATGGCATTGACTTTGACATTGAAGGTGGATCAAACAAACACTGGGGTGATCTTGCAAGGATCCTTAAAGGGTACGGCATGGCCAAACAAAGCAAGAAAGTGTACATAACTGCAGCACCTCAGTGCCCATTTCCTGATGCTTGGATAGGAAATGCTCTCACAACAGGCCTTTTTGACTTTGTTTGGGTCCAATTCTACAACAACCCTCCTTGCCAATACAATTCTTCTGGGGCAATTAGTAACCTTGAAGATGCATGGAAGCAATGGATCACAAGTATCCCTGCCAACAAGATATTCTTGGGGTTACCGGCTTCGCCACTGGCTGCAGGAAGTGGCTTCATTCCTTCTGCTGATCTTATTTCCAATGTGCTTCCAGCCATTAAGGGTTCTTCTAAATATGGAGGTGTTATGCTGTGGTCAAGGTATTATGATGTTCTGAGTGGTTACAGCTCTTCTATTAAGAAGTATGTTTGA

Predicted protein sequences of Glyma08g41100

Limit To All Plant Sequences

>Glyma08g41100.1   sequence type=predicted peptide   gene model=Glyma08g41100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALKSPISVTFLCLVLLALANGSYAGKITTYWGQNGDEGTLAEACATGNYDYVIIAFLPTFGKGQTPMINLAGHCDPHSNDGCTGLSSDIKSCQAKGIKVLLSLRGDVGSPSIDPSQAATYLWNNFLGGHSSTTRRPLGSAVLDGIDFDIEGGSNKHWGDLARILKGYGMAKQSKKVYITAAPQCPFPDAWIGNALTTGLFDFVWVQFYNNPPCQYNSSGAISNLEDAWKQWITSIPANKIFLGLPASPLAAGSGFIPSADLISNVLPAIKGSSKYGGVMLWSRYYDVLSGYSSSIKKYV*

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