Glyma08g41090 - SoyBase

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Report for Sequence Feature Glyma08g41090

Feature Type:	gene_model
Chromosome:	Gm08
Start:	41132753
stop:	41134501
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g41090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_I1N162	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N162_SOYBN	SoyBase	E_val: 4.00E-119	ISS
UniRef100_Q84JK8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Probable membrane-associated kinase regulator 6 n=1 Tax=Arabidopsis thaliana RepID=MAKR6_ARATH	SoyBase	E_val: 8.00E-09	ISS

Expression Patterns of Glyma08g41090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g41090

Paralog	Evidence	Comments
Glyma18g15340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g41090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g299600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g41090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g41090

Limit To All Plant Sequences

>Glyma08g41090.2   sequence type=CDS   gene model=Glyma08g41090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACCTCATTGCCTTTAGCCACGGATAGCTTCTCATATAGTTGGTTACCAAATTACAAACCCCTTGCAAATGACCTTAAGGAGCCTCTAAGAGAACCCACTTACAATTTTTGTGATGGCACAATCAATTATCCATTTATGGAAGATTGGCAAAACTTCAATTTTGATATTTCCATCACTCAGTCCCCTGCTGTTTTTTCTCATGCTGATGAACTTTTCTCTAATGGCCTTATCAAACCACTATTTGTTGGTCCTTCCAAGGTAGAGTTTTGCAATACCACCACAGATTCCACACAATCCAAGCCTGTTTCTTCTAGAAATGTTTCTCCAAGAACTGTGCAAATTCATCATGGTTTCCTCACAAAGTGGAAAACCTCTACATGTAGAACCTTGAGAAGCCTTTCAAGGTATGTCAACCAACTATGCCAGAAAGTTGGAAGCTCAAGGAAAAGTACTAAAGTTGATGATTTTGATAAAGAAGAGTGGCTAGTTAATAATAGCTGGAGCAGCTCACAGCAACCATCTCCAAAATCAAACACTGTCAATCATATTGGTGCTTTGCTTGATTATGAGAACTCAATCTATGAAGCAGTCCTCCATTGCAAAAGATCAATAGAAAGATGA

Predicted protein sequences of Glyma08g41090

Limit To All Plant Sequences

>Glyma08g41090.2   sequence type=predicted peptide   gene model=Glyma08g41090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METSLPLATDSFSYSWLPNYKPLANDLKEPLREPTYNFCDGTINYPFMEDWQNFNFDISITQSPAVFSHADELFSNGLIKPLFVGPSKVEFCNTTTDSTQSKPVSSRNVSPRTVQIHHGFLTKWKTSTCRTLRSLSRYVNQLCQKVGSSRKSTKVDDFDKEEWLVNNSWSSSQQPSPKSNTVNHIGALLDYENSIYEAVLHCKRSIER*

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