SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G18230 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligosaccharide biosynthesis protein Alg14 like (InterPro:IPR013969); Has 640 Blast hits to 640 proteins in 277 species: Archae - 4; Bacteria - 281; Metazoa - 94; Fungi - 127; Plants - 57; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). | chr4:10080521-10081710 REVERSE LENGTH | SoyBase | E_val: 7.00E-18 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF08660 | PFAM | Oligosaccharide biosynthesis protein Alg14 like | JGI | ISS | |
| UniRef100_C6SWY8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWY8_SOYBN | SoyBase | E_val: 7.00E-52 | ISS |
| UniRef100_G5DXJ6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Beta-1,4-N-acetylglucosaminyltransferase (Fragment) n=1 Tax=Silene latifolia RepID=G5DXJ6_SILLA | SoyBase | E_val: 3.00E-15 | ISS |
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Glyma08g41053 not represented in the dataset |
Glyma08g41053 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g299100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g41053.1 sequence type=CDS gene model=Glyma08g41053 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACAAAAGCAATGGCTGCAGCTTCTCTAGTGTGACTTCAATTGCTGTCTTCTCAAGTGCCATTTTTGTTGTAACTTTGATTTTGGTTTGTCTCCTTTATGTCATGTATTGTAGCAGCAGATCCTTGAGCAAAAGGGTTTTAAAACCTGCCACTACCCTTTTTATTTTAAGATCAGGTGGTCATACTGCTGAGATGCTCAATCTATTATTGGTAGTGTTGCAGAAAGATAGGTTCAAGCCAAGATTCTACATTGCTGCTGCTACTGACATGAGTCTTCAAGCATTGCTCATATTCTTCGCTCCTTTCGAGAACCGCATGCCGGCAGAAAGATCGGTGGTTCTGAACGACAGTTACAGCTTCGAGACTGTGCTCTGCGCGTACCCTTTTCTGAGTAGTGTTCTTTTTGCGGTGTTTGGTGTTGCGTACTCAATGTGGTTCTTGTTCTCATGTTGGAGGATTTTGTCACTTGTCATAAGCAAAGGCTTGAGGGTGAGAATTTACGTGTTGGCTTCGATTGTGCTCGTGGCGCGACACGTGGTGGTCAACGTTTGCAACTAA
>Glyma08g41053.1 sequence type=predicted peptide gene model=Glyma08g41053 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDKSNGCSFSSVTSIAVFSSAIFVVTLILVCLLYVMYCSSRSLSKRVLKPATTLFILRSGGHTAEMLNLLLVVLQKDRFKPRFYIAAATDMSLQALLIFFAPFENRMPAERSVVLNDSYSFETVLCAYPFLSSVLFAVFGVAYSMWFLFSCWRILSLVISKGLRVRIYVLASIVLVARHVVVNVCN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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