Report for Sequence Feature Glyma08g41020
Feature Type: gene_model
Chromosome: Gm08
Start: 41038626
stop: 41042348
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g41020
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G02870 AT
Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein | chr2:838378-839781 FORWARD LENGTH=467
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009610 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus
SoyBase N/A ISS
GO:0016036 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation
SoyBase N/A ISS
GO:0019375 GO-bp
Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process
SoyBase N/A ISS
GO:0042631 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR24413 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24413:SF218 Panther
JGI ISS
PF01344 PFAM
Kelch motif
JGI ISS
UniRef100_G7KCH5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein SKIP11 n=1 Tax=Medicago truncatula RepID=G7KCH5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI0002338879 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002338879 related cluster n=1 Tax=unknown RepID=UPI0002338879
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g41020
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g41020
Paralog Evidence Comments
Glyma18g15570 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g41020 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g298900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g41020
Coding sequences of Glyma08g41020
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g41020.1 sequence type=CDS gene model=Glyma08g41020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTGGAGGGTCGTTCCTGCGTGGTTCCGAGGTTGTTTCCCAGTTCTTGCCAGGCAGATAACAAGTGGTCTTTCATGACATACCTGCCGGACTTGGACATAAAGAATGGCAAGCGCCCTTTAGACACTGATGGGGAGGAAGAACCCCAGCCAAGGAAGGTGAATAGGAGAGTGGATTCTCGCCATCATGGCGAGACCACTCGGTTCTTGTTTCAAAAACAATCGTGTCATGCTGATGATTCTGTTGTTCCACAAATGGATCAGGATCGGAGGAAGGATTGCGTGTTGTTGAGTAATTGGCAAAGAGTTGAGAAGGCTGATGCCTTTTCTGCCCAGCTTTTGGATGAACGAGAGCAGCATCGCGCTGGGGATTCATTGGTGGTGTCCACTGACCTTCAATCTAATAAAAAGGAGGAGGATCAGTTAGAGGATTCATCAGATTCTGGTGTTCAGCAATCTGATGAACAGAAGATGGAGCAGGAGGTGGAAGGGGATTTGCTGGATGCTGGTGACCAGCAGCCACCTGATGATCAGGAAGAGCATCATGGTGGGGATTCATCAGATTCTGGTTCTCTTTTGCCCCGAATGAATCGGGACAGCTCAATCGCTTGTCTCAGCCGCTGCTCCAGGTCCGACTATGGCTCTCTGGCCTCGCTGAATAGGAGCTTTCGGAACACAATCCGAAGTGGTGAGTTGTATAGGTGGAGGAGACTTAATGGGATAATAGAACACTGGATTTATTTTTCCTGTGCCCTCCTTGAATGGGAGGCCTATGATCCAATTCGCGAACGGTGGATGCATTTACCAAGGATGGCTTCTAATGAATGCTTCATGTGTTCAGATAAGGAGTCTTTAGCTGTAGGAACTGAACTTCTTGTGTTTGGAAGGGAGATGAGGTCCCATGTTATTTACAGATACAGTCTTTTGACTAACTCATGGACATCTGGAATGAGGATGAATGCTCCAAGATGCTTGTTTGGATCTGCTAGTTTGGGGGAGATTGCTATTTTAGCTGGCGGGTGCGATTTGGACGGTCATATCCTTGACTCTGCTGAACTGTACAATTCTGAGAATCAAACCTGGGAACTACTCCCTAGCATGAACAAGCCGAGGAAGATGTGCTCTGGGGTATTTATGGATGGAAAGTTTTATGTTATTGGTGGAATTGGTGGAAAAGATTCTAAGCTTCTTACATGTGGTGAGGAGTACAATATACAAACTAGAACATGGACAGAAATTCCTAACATGTCCCCTGGACGCAGTGCCAGGGGAGCTGAAATGCCTGCAACAGCTGAGGCGCCACCTCTGGTTGCCGTTGTAAATGATGAATTATATGCTGCTGATTATGCTGACATGGAGGTAAAAAAATACGACAAGGAGCGAAGAGTGTGGGTTACCATTGGGAGACTACCTGAGCGAGCAGTGTCGATGAATGGTTGGGGTCTTGCATTCAGGGCGTGCGGAGATATGCTTATTGTCATCGGTGGACCAAGGACTCATGGTGAGGGTTTTATTGAACTCAATTCATGGGTTCCCAGTGAAGGACCTCCACAGTGGAATCTACTCGCCAGAAAACGGTCTGGCAACTTTGTCTATAATTGTGCTGTGATGGGATGTTGA
Predicted protein sequences of Glyma08g41020
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g41020.1 sequence type=predicted peptide gene model=Glyma08g41020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLEGRSCVVPRLFPSSCQADNKWSFMTYLPDLDIKNGKRPLDTDGEEEPQPRKVNRRVDSRHHGETTRFLFQKQSCHADDSVVPQMDQDRRKDCVLLSNWQRVEKADAFSAQLLDEREQHRAGDSLVVSTDLQSNKKEEDQLEDSSDSGVQQSDEQKMEQEVEGDLLDAGDQQPPDDQEEHHGGDSSDSGSLLPRMNRDSSIACLSRCSRSDYGSLASLNRSFRNTIRSGELYRWRRLNGIIEHWIYFSCALLEWEAYDPIRERWMHLPRMASNECFMCSDKESLAVGTELLVFGREMRSHVIYRYSLLTNSWTSGMRMNAPRCLFGSASLGEIAILAGGCDLDGHILDSAELYNSENQTWELLPSMNKPRKMCSGVFMDGKFYVIGGIGGKDSKLLTCGEEYNIQTRTWTEIPNMSPGRSARGAEMPATAEAPPLVAVVNDELYAADYADMEVKKYDKERRVWVTIGRLPERAVSMNGWGLAFRACGDMLIVIGGPRTHGEGFIELNSWVPSEGPPQWNLLARKRSGNFVYNCAVMGC*