Glyma08g40980 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g40980

Feature Type:	gene_model
Chromosome:	Gm08
Start:	40948455
stop:	40954174
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g40980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G02860	AT	Annotation by Michelle Graham. TAIR10: sucrose transporter 2 \| chr2:828546-832296 REVERSE LENGTH=594	SoyBase	E_val: 0	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009620	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fungus	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0015770	GO-bp	Annotation by Michelle Graham. GO Biological Process: sucrose transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005887	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0090406	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: pollen tube	SoyBase	N/A	ISS
GO:0005351	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity	SoyBase	N/A	ISS
GO:0008506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sucrose:hydrogen symporter activity	SoyBase	N/A	ISS
GO:0008515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sucrose transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015144	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity	SoyBase	N/A	ISS
KOG0637	KOG	Sucrose transporter and related proteins	JGI		ISS
PTHR19432	Panther	SUCROSE TRANSPORT PROTEIN	JGI		ISS
PTHR19432:SF2	Panther	PROSTEIN PROTEIN	JGI		ISS
PF07690	PFAM	Major Facilitator Superfamily	JGI		ISS
UniRef100_I1KXR9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KXR9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_J7FDE7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SUT2 n=1 Tax=Medicago truncatula RepID=J7FDE7_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g40980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g40980

Paralog	Evidence	Comments
Glyma18g15950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g40980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g298500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g40980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g40980

Limit To All Plant Sequences

>Glyma08g40980.2   sequence type=transcript   gene model=Glyma08g40980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCAATCTTTAACCAAAGGAATTGTGTTTCCATTCAAAAGAAGGGACCCACGTGGCAGTGTAAGCAGGTCGCGAGTACCATCCTTGACGCTGCTGCAACGTAGCAGATTTCCCTTGCATTGCTTGCAACCATGGTAGCTTCCATTTCTTCACCCGCCCAATTTCTTTGACCTTCTCTCTCACTCTCCGATCCCATTTCGTTCCAACGCAAAAGAAAGAAACCCTAGAGAGTCCTAGACGTCGTCGTTTCTTACCTCTACCTCGATCCGTGTCAATGTCCAGAGGCGCGTGGCGATGATGACGGGGAAGTCTGACTTGTTGTCGATCCGCGTTCCCTACAAGAATCTCCACCACGATTCCTCCGCCCCCGAACTCGAACTCGTCGACGTCAACCACCGCAACTTGCCACCATCACCGCCACCGCCAAATCACTCTCCCTCGCCGCCGAACAACAACAACATCAACGCTCCGTTGCTTCATCTCGTTCTCAGTTGCACCGTCGCCGCCGGCGTCCAATTCGGCTGGGCCTTGCAGCTCTCTCTCTTGACGCCCTACATTCAGACGTTGGGAATAGGACATGCGTTTTCTTCGTTTATTTGGCTCTGTGGCCCCATTACAGGTCTTGTGGTTCAACCATGCGTTGGTATTTGGAGTGATAAATGTACTTCAAGGTTTGGCAGAAGACGGCCGTTCATTCTGGCAGGATCTCTTATGATATGTCTGGCTGTGATACACATGAGCATTGCAGAACATTTAAAGGGACCCGAACAAGGGCTGCTCTTGTATTTATTCTTGGGTTCTGGATGCTGGACCTTGCTAACAACACAGTGCAGGGGCCAGCTCGAGCACTTTTGGCTGATCTGTCTGGTCCTGATCAACGCAATGTTGCAAATGCTATATTTTGCTCGTGGATGGCAGTTGGGAACATCCTAGGATATTCTTCAGGTGCTAGTGGAAAGTGGAACAAATGGTTTCCTTTCTTGACAACTAGAGCTTGCTGTGAAGCCTGTGGCAATCTTAAAGCAGCATTTCTTGTGGCTGTGGTGTTTCTGACATTATGCACACTTGTCACCCTATATTTTGCTGATGAGGTTCCACTTACTACTGCAAGTCAACATCATCACTTGTCAGATTCTTCTCCTTTACTGGATGAACAACAACAAAATGGTGTTGATTTTTCAAAATTAAAGCCTTTATCTGTTATGGATGAATCCAATAGTAAGAGAACTGAGAATCACATTGAGAAAGATACAGAGCTGAAGCATGGGAATTTCAAAGCTGGGGAAGATCATGCTGAAAATGTAATGGATGGGCCTGGAGCGGTATTGGTAAACTTGTTGACAAGTTTAAGGCATTTGCCACCTGCCATGCATTCAGTCCTGGTTGTAATGGCTCTCACTTGGTTGTCTTGGTTTCCCTTCTTTCTGTTTGATACGGATTGGATGGGGAGAGAAGTTTATCATGGTGATCCAAAAGGGGACACTTCTGAAGTAGATCTTTATGATCAAGGAGTTAGAGAAGGTGCATTTGGTTTGCTATTGAATTCTGTTGTCCTTGGAATTAGCTCTTTCTTCATTGAACCAATGTGTAAGTGGATGGGTGCAAAATTAGTATGGGCACTGAGCAATTTTATCGTCTTTGTTTGCATGGCTGGCACTGCTATCATTAGTCTTATTTCAGTAAGAGATTATTCTGGAGGGATAGAACACATAATTGGAGCAAATGAAGGAATCAAGATGGCTTCCTTGGTTGTGTTTGTTCTTCTTGGTTTTCCTCTTGCGATTACCTATAGTGTTCCCTTTGCCGTCACAGCAGAGTTGACTGCTGATTCAGGAGGTGGCCAAGGATTGGCTATAGGAGTTCTAAATCTTGCAATTGTTGTTCCTCAGATGATTATATCCCTTGGTTCTGGTCCTTGGGATGCTCTCTTTGGTGGTGGCAATATCCCTGCGTTTGTTTTGGCTTCCGTGTGTGCTCTTGCCGGTGCTGTCATTGCAACTCTCAAACTGCCAGATCTCTCTAGCAGTTCATTCCAGTCAACAGGTTTTCATATTGGCTAGCCATTGGGAGAGATCTAACCTGATAATATCTAACTTGTACGTGGTCCTGTGAAATCGGGAGTACACCCAAAATATGGAGAGCTGGCACGGTGATTGCGTGTTATGTTGCTTTCCAACCCACAAAAGGCGCATGCCATATTCAAATTCATTCTTTTTGCCCCCCACATTGTGGTTGTCTGTATTTTATGTAATGTAATGTTAACTGACTGCACAGTAGAAGAAAGCTTTGGGGCATATAGTAACACGGTTTTGTAATATGTTATTCACTCACTTATGCGTTGTTTGGACAAGTGAAATATACAGGGGAAAAAAATAAGAGAAGAGATAGAAGGGGGATGGAAATGAAAAGAAGTAAAGTAGAAAAAAATATGTTGTTTAGATGAATAGCAACAGGTGTTTTTTTTTTTTTTGTTTTCTTTAATTACTGTTTTAGTCACTGAATTTCAGGTATATATTTTTGTAGTCCCTGAAATTTAAAAATATTTTTTTTTAGTCTTTGAATTTTGAATATTGTATTTTTTGTCCCTGACATAATAAATTGACATTT

Coding sequences of Glyma08g40980

Limit To All Plant Sequences

>Glyma08g40980.1   sequence type=CDS   gene model=Glyma08g40980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGACGGGGAAGTCTGACTTGTTGTCGATCCGCGTTCCCTACAAGAATCTCCACCACGATTCCTCCGCCCCCGAACTCGAACTCGTCGACGTCAACCACCGCAACTTGCCACCATCACCGCCACCGCCAAATCACTCTCCCTCGCCGCCGAACAACAACAACATCAACGCTCCGTTGCTTCATCTCGTTCTCAGTTGCACCGTCGCCGCCGGCGTCCAATTCGGCTGGGCCTTGCAGCTCTCTCTCTTGACGCCCTACATTCAGACGTTGGGAATAGGACATGCGTTTTCTTCGTTTATTTGGCTCTGTGGCCCCATTACAGGTCTTGTGGTTCAACCATGCGTTGGTATTTGGAGTGATAAATGTACTTCAAGGTTTGGCAGAAGACGGCCGTTCATTCTGGCAGGATCTCTTATGATATGTCTGGCTGTGATATTAATCGGATTTTCTGCTGACATTGGATATGTATTAGGTGATACACATGAGCATTGCAGAACATTTAAAGGGACCCGAACAAGGGCTGCTCTTGTATTTATTCTTGGGTTCTGGATGCTGGACCTTGCTAACAACACAGTGCAGGGGCCAGCTCGAGCACTTTTGGCTGATCTGTCTGGTCCTGATCAACGCAATGTTGCAAATGCTATATTTTGCTCGTGGATGGCAGTTGGGAACATCCTAGGATATTCTTCAGGTGCTAGTGGAAAGTGGAACAAATGGTTTCCTTTCTTGACAACTAGAGCTTGCTGTGAAGCCTGTGGCAATCTTAAAGCAGCATTTCTTGTGGCTGTGGTGTTTCTGACATTATGCACACTTGTCACCCTATATTTTGCTGATGAGGTTCCACTTACTACTGCAAGTCAACATCATCACTTGTCAGATTCTTCTCCTTTACTGGATGAACAACAACAAAATGGTGTTGATTTTTCAAAATTAAAGCCTTTATCTGTTATGGATGAATCCAATAGTAAGAGAACTGAGAATCACATTGAGAAAGATACAGAGCTGAAGCATGGGAATTTCAAAGCTGGGGAAGATCATGCTGAAAATGTAATGGATGGGCCTGGAGCGGTATTGGTAAACTTGTTGACAAGTTTAAGGCATTTGCCACCTGCCATGCATTCAGTCCTGGTTGTAATGGCTCTCACTTGGTTGTCTTGGTTTCCCTTCTTTCTGTTTGATACGGATTGGATGGGGAGAGAAGTTTATCATGGTGATCCAAAAGGGGACACTTCTGAAGTAGATCTTTATGATCAAGGAGTTAGAGAAGGTGCATTTGGTTTGCTATTGAATTCTGTTGTCCTTGGAATTAGCTCTTTCTTCATTGAACCAATGTGTAAGTGGATGGGTGCAAAATTAGTATGGGCACTGAGCAATTTTATCGTCTTTGTTTGCATGGCTGGCACTGCTATCATTAGTCTTATTTCAGTAAGAGATTATTCTGGAGGGATAGAACACATAATTGGAGCAAATGAAGGAATCAAGATGGCTTCCTTGGTTGTGTTTGTTCTTCTTGGTTTTCCTCTTGCGATTACCTATAGTGTTCCCTTTGCCGTCACAGCAGAGTTGACTGCTGATTCAGGAGGTGGCCAAGGATTGGCTATAGGAGTTCTAAATCTTGCAATTGTTGTTCCTCAGATGATTATATCCCTTGGTTCTGGTCCTTGGGATGCTCTCTTTGGTGGTGGCAATATCCCTGCGTTTGTTTTGGCTTCCGTGTGTGCTCTTGCCGGTGCTGTCATTGCAACTCTCAAACTGCCAGATCTCTCTAGCAGTTCATTCCAGTCAACAGGTTTTCATATTGGCTAG

>Glyma08g40980.2   sequence type=CDS   gene model=Glyma08g40980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACTTCAAGGTTTGGCAGAAGACGGCCGTTCATTCTGGCAGGATCTCTTATGATATGTCTGGCTGTGATACACATGAGCATTGCAGAACATTTAAAGGGACCCGAACAAGGGCTGCTCTTGTATTTATTCTTGGGTTCTGGATGCTGGACCTTGCTAACAACACAGTGCAGGGGCCAGCTCGAGCACTTTTGGCTGATCTGTCTGGTCCTGATCAACGCAATGTTGCAAATGCTATATTTTGCTCGTGGATGGCAGTTGGGAACATCCTAGGATATTCTTCAGGTGCTAGTGGAAAGTGGAACAAATGGTTTCCTTTCTTGACAACTAGAGCTTGCTGTGAAGCCTGTGGCAATCTTAAAGCAGCATTTCTTGTGGCTGTGGTGTTTCTGACATTATGCACACTTGTCACCCTATATTTTGCTGATGAGGTTCCACTTACTACTGCAAGTCAACATCATCACTTGTCAGATTCTTCTCCTTTACTGGATGAACAACAACAAAATGGTGTTGATTTTTCAAAATTAAAGCCTTTATCTGTTATGGATGAATCCAATAGTAAGAGAACTGAGAATCACATTGAGAAAGATACAGAGCTGAAGCATGGGAATTTCAAAGCTGGGGAAGATCATGCTGAAAATGTAATGGATGGGCCTGGAGCGGTATTGGTAAACTTGTTGACAAGTTTAAGGCATTTGCCACCTGCCATGCATTCAGTCCTGGTTGTAATGGCTCTCACTTGGTTGTCTTGGTTTCCCTTCTTTCTGTTTGATACGGATTGGATGGGGAGAGAAGTTTATCATGGTGATCCAAAAGGGGACACTTCTGAAGTAGATCTTTATGATCAAGGAGTTAGAGAAGGTGCATTTGGTTTGCTATTGAATTCTGTTGTCCTTGGAATTAGCTCTTTCTTCATTGAACCAATGTGTAAGTGGATGGGTGCAAAATTAGTATGGGCACTGAGCAATTTTATCGTCTTTGTTTGCATGGCTGGCACTGCTATCATTAGTCTTATTTCAGTAAGAGATTATTCTGGAGGGATAGAACACATAATTGGAGCAAATGAAGGAATCAAGATGGCTTCCTTGGTTGTGTTTGTTCTTCTTGGTTTTCCTCTTGCGATTACCTATAGTGTTCCCTTTGCCGTCACAGCAGAGTTGACTGCTGATTCAGGAGGTGGCCAAGGATTGGCTATAGGAGTTCTAAATCTTGCAATTGTTGTTCCTCAGATGATTATATCCCTTGGTTCTGGTCCTTGGGATGCTCTCTTTGGTGGTGGCAATATCCCTGCGTTTGTTTTGGCTTCCGTGTGTGCTCTTGCCGGTGCTGTCATTGCAACTCTCAAACTGCCAGATCTCTCTAGCAGTTCATTCCAGTCAACAGGTTTTCATATTGGCTAG

Predicted protein sequences of Glyma08g40980

Limit To All Plant Sequences

>Glyma08g40980.1   sequence type=predicted peptide   gene model=Glyma08g40980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMTGKSDLLSIRVPYKNLHHDSSAPELELVDVNHRNLPPSPPPPNHSPSPPNNNNINAPLLHLVLSCTVAAGVQFGWALQLSLLTPYIQTLGIGHAFSSFIWLCGPITGLVVQPCVGIWSDKCTSRFGRRRPFILAGSLMICLAVILIGFSADIGYVLGDTHEHCRTFKGTRTRAALVFILGFWMLDLANNTVQGPARALLADLSGPDQRNVANAIFCSWMAVGNILGYSSGASGKWNKWFPFLTTRACCEACGNLKAAFLVAVVFLTLCTLVTLYFADEVPLTTASQHHHLSDSSPLLDEQQQNGVDFSKLKPLSVMDESNSKRTENHIEKDTELKHGNFKAGEDHAENVMDGPGAVLVNLLTSLRHLPPAMHSVLVVMALTWLSWFPFFLFDTDWMGREVYHGDPKGDTSEVDLYDQGVREGAFGLLLNSVVLGISSFFIEPMCKWMGAKLVWALSNFIVFVCMAGTAIISLISVRDYSGGIEHIIGANEGIKMASLVVFVLLGFPLAITYSVPFAVTAELTADSGGGQGLAIGVLNLAIVVPQMIISLGSGPWDALFGGGNIPAFVLASVCALAGAVIATLKLPDLSSSSFQSTGFHIG*

>Glyma08g40980.2   sequence type=predicted peptide   gene model=Glyma08g40980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYFKVWQKTAVHSGRISYDMSGCDTHEHCRTFKGTRTRAALVFILGFWMLDLANNTVQGPARALLADLSGPDQRNVANAIFCSWMAVGNILGYSSGASGKWNKWFPFLTTRACCEACGNLKAAFLVAVVFLTLCTLVTLYFADEVPLTTASQHHHLSDSSPLLDEQQQNGVDFSKLKPLSVMDESNSKRTENHIEKDTELKHGNFKAGEDHAENVMDGPGAVLVNLLTSLRHLPPAMHSVLVVMALTWLSWFPFFLFDTDWMGREVYHGDPKGDTSEVDLYDQGVREGAFGLLLNSVVLGISSFFIEPMCKWMGAKLVWALSNFIVFVCMAGTAIISLISVRDYSGGIEHIIGANEGIKMASLVVFVLLGFPLAITYSVPFAVTAELTADSGGGQGLAIGVLNLAIVVPQMIISLGSGPWDALFGGGNIPAFVLASVCALAGAVIATLKLPDLSSSSFQSTGFHIG*

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