Glyma08g40860 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g40860

Feature Type:	gene_model
Chromosome:	Gm08
Start:	40712470
stop:	40721915
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g40860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G02760	AT	Annotation by Michelle Graham. TAIR10: ubiquiting-conjugating enzyme 2 \| chr2:774271-775149 FORWARD LENGTH=152	SoyBase	E_val: 2.00E-109	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0009650	GO-bp	Annotation by Michelle Graham. GO Biological Process: UV protection	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0033523	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H2B ubiquitination	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0016881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity	SoyBase	N/A	ISS
KOG0419	KOG	Ubiquitin-protein ligase	JGI		ISS
PTHR24067	Panther	UBIQUITIN-CONJUGATING ENZYME E2	JGI		ISS
PF00179	PFAM	Ubiquitin-conjugating enzyme	JGI		ISS
UniRef100_A9PBR0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histone ubiquitination proteins group n=13 Tax=Spermatophyta RepID=A9PBR0_POPTR	SoyBase	E_val: 2.00E-108	ISS
UniRef100_I1KXR3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXR3_SOYBN	SoyBase	E_val: 6.00E-109	ISS

Expression Patterns of Glyma08g40860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g40860

Paralog	Evidence	Comments
Glyma18g16160	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g40860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g297300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g40860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g40860

Limit To All Plant Sequences

>Glyma08g40860.2   sequence type=transcript   gene model=Glyma08g40860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGAGACACAGCTGACTCGACCATTCTATAAAATCAAAATAATTGAAACCAAAGATTCTTTCTTTCATTCTCTCTCATGATCCCTGAGCCATGGTACCATTTCCCTCATAAAATTCTCTCTTCCTTTTTGGGTTCTCCTATTCCAAGCTTCAATCTTTTCTCTCTTCTCACAGCCTTCTTCACTCACAGGAGGTGAAGATGTCGACTCCGGCTAGGAAGAGACTGATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGCCCAGATGACACCCCTTGGGATGGAGGTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACATTTATGCGGATGGCAGTATATGCTTGGACATTTTACAAAATCAGTGGAGCCCTATATATGATGTAGCTGCAATTCTTACCTCAATCCAGTCATTGTTGTGTGATCCAAACCCAAATTCACCAGCAAATTCTGAAGCTGCTCGGATGTTCAGCGAAAACAAGCGCGAATACAACAGAAAAGTACGCGAGATTGTTGAGCAAAGTTGGACTGCTGATTAATCATTATAGATAAGATAGGGCTTGTGTGGCAATCAAAAGGTTGTCAAAAGGATATGGTTGAATAACCACCAGACTTCAAAAAGGACCATTATGATTTTCTTGTCATCCCTGACAATGTGTTTGCTCACACTTTACGTGTTAATGTTCCACCTTATTTTCTCCATGTTGTGTGGTTCATTTGTCTTTGGTTACAACTTTATCATTATAACATAGGATGGCGTATCAAACCGGCGATTTTTTTAGCAATATAAACAAAATGGTCCTTATTACCCTTGGAAAGGTAGAAAGGGACTCGAGAGCATAGCATGTGTACATGCTAACATGCTACTAAAAGTAGGATGCCAACTTGTTTTTCTTTTATGAGTGGAGTATTATTTGAGGACCATTATTTTACAAGGATGAACTCTTTCATTATTAG

Coding sequences of Glyma08g40860

Limit To All Plant Sequences

>Glyma08g40860.1   sequence type=CDS   gene model=Glyma08g40860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGACTCCGGCTAGGAAGAGACTGATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGCCCAGATGACACCCCTTGGGATGGAGGTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACATTTATGCGGATGGCAGTATATGCTTGGACATTTTACAAAATCAGTGGAGCCCTATATATGATGTAGCTGCAATTCTTACCTCAATCCAGTCATTGTTGTGTGATCCAAACCCAAATTCACCAGCAAATTCTGAAGCTGCTCGGATGTTCAGCGAAAACAAGCGCGAATACAACAGAAAAGTACGCGAGATTGTTGAGCAAAGTTGGACTGCTGATTAA

>Glyma08g40860.2   sequence type=CDS   gene model=Glyma08g40860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGACTCCGGCTAGGAAGAGACTGATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGCCCAGATGACACCCCTTGGGATGGAGGTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCACCTACTGTGCGCTTTGTTTCTCGAATGTTTCATCCTAACATTTATGCGGATGGCAGTATATGCTTGGACATTTTACAAAATCAGTGGAGCCCTATATATGATGTAGCTGCAATTCTTACCTCAATCCAGTCATTGTTGTGTGATCCAAACCCAAATTCACCAGCAAATTCTGAAGCTGCTCGGATGTTCAGCGAAAACAAGCGCGAATACAACAGAAAAGTACGCGAGATTGTTGAGCAAAGTTGGACTGCTGATTAA

Predicted protein sequences of Glyma08g40860

Limit To All Plant Sequences

>Glyma08g40860.1   sequence type=predicted peptide   gene model=Glyma08g40860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRKVREIVEQSWTAD*

>Glyma08g40860.2   sequence type=predicted peptide   gene model=Glyma08g40860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRKVREIVEQSWTAD*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain