Glyma08g40850 - SoyBase

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Report for Sequence Feature Glyma08g40850

Feature Type:	gene_model
Chromosome:	Gm08
Start:	40704672
stop:	40708161
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g40850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14410	AT	Annotation by Michelle Graham. TAIR10: ssDNA-binding transcriptional regulator \| chr1:4929352-4930810 REVERSE LENGTH=263	SoyBase	E_val: 2.00E-112	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0032211	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of telomere maintenance via telomerase	SoyBase	N/A	ISS
GO:0005697	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: telomerase holoenzyme complex	SoyBase	N/A	ISS
GO:0009295	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleoid	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009508	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid chromosome	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003697	GO-mf	Annotation by Michelle Graham. GO Molecular Function: single-stranded DNA binding	SoyBase	N/A	ISS
GO:0042162	GO-mf	Annotation by Michelle Graham. GO Molecular Function: telomeric DNA binding	SoyBase	N/A	ISS
PF08536	PFAM	Whirly transcription factor	JGI		ISS
UniRef100_D9ZJE7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WHY domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJE7_MALDO	SoyBase	E_val: 2.00E-112	ISS
UniRef100_I1KXQ8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXQ8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g40850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g40850

Paralog	Evidence	Comments
Glyma18g16200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g40850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g297200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g40850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g40850

Limit To All Plant Sequences

>Glyma08g40850.2   sequence type=transcript   gene model=Glyma08g40850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACGCACTCTAACAAAGACCGGGAAAGGCACAGGGAAAGCAGCAGCAGAAGCAGAAAAAGATAGAGTGAGGTGAAGAAAGATGTCGAATTTGCAGTTACAGCTTCACTCTCCTCCACCATCATCCCTCTTATCATCTTCATCATCACCATCATCACTATACTCTTCTTCTTCTCTTAAGCTATTCCCAAACCACCCTTTTTCCACAAAGTCCCTTCCTTTCAACAATCATAAACATTTCTCCCTAAGATGCCGCCACACTGACCTCTTCGACCAGAACACCATAGCCTCCACACCACGACCAACGAGACCCTCTGCTTCAGTTGGAGCTTTGCCGCCTAGGGTTTATGTTGGTTACTCCATTTACAAAGGGAAGGCTGCGCTTACATTGACTCCTAGGCCCCCGGAATTCATGCCGCTCGATTCAGGAGCATACAAAATATCCAAGGAAGGTTATGTGCTGCTTCAGTTTGCACCGGCGGTTGGTACGCGCCAATATGATTGGAATAGGAAGCAGGTGTTTTCCTTATCAGTGAGTGAAATGGGAAGTGTGATTAGCCTTGGTGCAAGGGACTCTTATGAACTTTTTCATGATCCTTTTAAGGGCAAAAGGTGTTCAAAACAACCTTGTGAATGTGGATGAAAGCATCTATATCCCTGTTACAAAAGCAGAGTTGGCAGTTTTGACCTCAACTTTCAATTTTATCATGCCATACCTTCTGGGTTGGCACACCTTTGCAAACTCCATAAAGCCAGAAGATAATGGAGTGAATAATGCCAACCCAAGATATGGAGGAGACTATGAATGGAACAGATAGAGATCACTTTTTGCTTGTATTTCACCAATCACCCTGTGAAGTTCTCAACTTCCAAATTTGTTAAATCACTGCATTTTGTTAGCTAGAATTGTTTTAGAAATTGTGACTTTTGAGATGGTAATGTCTAATTGAGTTATTCCTCTCATTTTTTTCTTGCTACTAGTGTTAGTGCTTGCTCAAGAATGGATGATATTACGGATGAAAAAGTTCAAATAATTAAAGAACTGAAAAAAGTATATAATTTAAACTACCACGAGAGAAATTTGGTGTATTTTTTTTAATGTAAAATGATATTTGTGGTAAGTATTCCCCTAC

>Glyma08g40850.3   sequence type=transcript   gene model=Glyma08g40850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACGCACTCTAACAAAGACCGGGAAAGGCACAGGGAAAGCAGCAGCAGAAGCAGAAAAAGATAGAGTGAGGTGAAGAAAGATGTCGAATTTGCAGTTACAGCTTCACTCTCCTCCACCATCATCCCTCTTATCATCTTCATCATCACCATCATCACTATACTCTTCTTCTTCTCTTAAGCTATTCCCAAACCACCCTTTTTCCACAAAGTCCCTTCCTTTCAACAATCATAAACATTTCTCCCTAAGATGCCGCCACACTGACCTCTTCGACCAGAACACCATAGCCTCCACACCACGACCAACGAGACCCTCTGCTTCAGTTGGAGCTTTGCCGCCTAGGGTTTATGTTGGTTACTCCATTTACAAAGGGAAGGCTGCGCTTACATTGACTCCTAGGCCCCCGGAATTCATGCCGCTCGATTCAGGAGCATACAAAATATCCAAGGAAGGTTATGTGCTGCTTCAGTTTGCACCGGCGGTTGGTACGCGCCAATATGATTGGAATAGGAAGCAGGTGTTTTCCTTATCAGTGAGTGAAATGGGAAGTGTGATTAGCCTTGGTGCAAGGGACTCTTATGAACTTTTTCATGATCCTTTTAAGGGCAAAAGTGATGAAGGTAAAGTCAGAAAAATTTTGAAGGTGGAGCCTCTTCCAGATGGTTCTGGACACTTCTTTAACCTAATTCTAACTCTGTTATGGAATTTCCCAAGGTGTTCAAAACAACCTTGTGAATGTGGATGAAAGCATCTATATCCCTGTTACAAAAGCAGAGTTGGCAGTTTTGACCTCAACTTTCAATTTTATCATGCCATACCTTCTGGGTTGGCACACCTTTGCAAACTCCATAAAGCCAGAAGATAATGGAGTGAATAATGCCAACCCAAGATATGGAGGAGACTATGAATGGAACAGATAGAGATCACTTTTTGCTTGTATTTCACCAATCACCCTGTGAAGTTCTCAACTTCCAAATTTGTTAAATCACTGCATTTTGTTAGCTAGAATTGTTTTAGAAATTGTGACTTTTGAGATGGTAATGTCTAATTGAGTTATTCCTCTCATTTTTTTCTTGCTACTAGTGTTAGTGCTTGCTCAAGAATGGATGATATTACGGATGAAAAAGTTCAAATAATTAAAGAACTGAAAAAAGTATATAATTTAAACTACCACGAGAGAAATTTGGTGTATTTTTTTTAATGTAAAATGATATTTGTGGTAAGTATTCCCCTAC

>Glyma08g40850.4   sequence type=transcript   gene model=Glyma08g40850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACGCACTCTAACAAAGACCGGGAAAGGCACAGGGAAAGCAGCAGCAGAAGCAGAAAAAGATAGAGTGAGGTGAAGAAAGATGTCGAATTTGCAGTTACAGCTTCACTCTCCTCCACCATCATCCCTCTTATCATCTTCATCATCACCATCATCACTATACTCTTCTTCTTCTCTTAAGCTATTCCCAAACCACCCTTTTTCCACAAAGTCCCTTCCTTTCAACAATCATAAACATTTCTCCCTAAGATGCCGCCACACTGACCTCTTCGACCAGAACACCATAGCCTCCACACCACGACCAACGAGACCCTCTGCTTCAGTTGGAGCTTTGCCGCCTAGGGTTTATGTTGGTTACTCCATTTACAAAGGGAAGGCTGCGCTTACATTGACTCCTAGGCCCCCGGAATTCATGCCGCTCGATTCAGGAGCATACAAAATATCCAAGGAAGGTTATGTGCTGCTTCAGTTTGCACCGGCGGTTGGTACGCGCCAATATGATTGGAATAGGAAGCAGGTGTTTTCCTTATCAGTGAGTGAAATGGGAAGTGTGATTAGCCTTGGTGCAAGGGACTCTTATGAACTTTTTCATGATCCTTTTAAGGGCAAAAGTGATGAAGGTAAAGTCAGAAAAATTTTGAAGGTGGAGCCTCTTCCAGATGGTTCTGGACACTTCTTTAACCTAAGTGTTCAAAACAACCTTGTGAATGTGGATGAAAGCATCTATATCCCTGTTACAAAAGCAGAGTTGGCAGTTTTGACCTCAACTTTCAATGTATAACTTCCTCTCTCTCTCTCTCCCTTCTAATATAAATTGCCAGCATCTGCATTTTCATGTTTCTCTTATAGTTCTATGAAAAGATGTTGTAGCAGAAATGACTGATCATCATTATAGAGTATTAACATTAAAATCTGACTACTGTAAACTTTGTAGTAATAGCTTAACATTATTCATCAAAATTCTGTTGCCTAGCCAGACTAGGAACATATCTTCACACTGTAAGATGCCATGAAGTCTTTAAAAGGTTTATAAATTTTCTGCATGTCTGTTTGAAAGAGAATTTAGAACTTGGAATAGCTCCACAGGTCATTGGAAAAATGGCTTGTTTATGTTTAATGTTAATGTACCATTTCAACAAGAGTTTTTCTAGTTGAACAGTACATTTCATGCTTTGGTAAATGTAACTTTCCTTTATGCATGGTTGCATACAATCTGATTAATATCTTGTTCATATTGGATGTACTTTTGATACTTTTTTCTTTTTCTTTTTGTAGTTTATCATGCCATACCTTCTGGGTTGGCACACCTTTGCAAACTCCATAAAGCCAGAAGATAATGGAGTGAATAATGCCAACCCAAGATATGGAGGAGACTATGAATGGAACAGATAGAGATCACTTTTTGCTTGTATTTCACCAATCACCCTGTGAAGTTCTCAACTTCCAAATTTGTTAAATCACTGCATTTTGTTAGCTAGAATTGTTTTAGAAATTGTGACTTTTGAGATGGTAATGTCTAATTGAGTTATTCCTCTCATTTTTTTCTTGCTACTAGTGTTAGTGCTTGCTCAAGAATGGATGATATTACGGATGAAAAAGTTCAAATAATTAAAGAACTGAAAAAAGTATATAATTTAAACTACCACGAGAGAAATTTGGTGTATTTTTTTTAATGTAAAATGATATTTGTGGTAAGTATTCCCCTAC

Coding sequences of Glyma08g40850

Limit To All Plant Sequences

>Glyma08g40850.1   sequence type=CDS   gene model=Glyma08g40850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGAATTTGCAGTTACAGCTTCACTCTCCTCCACCATCATCCCTCTTATCATCTTCATCATCACCATCATCACTATACTCTTCTTCTTCTCTTAAGCTATTCCCAAACCACCCTTTTTCCACAAAGTCCCTTCCTTTCAACAATCATAAACATTTCTCCCTAAGATGCCGCCACACTGACCTCTTCGACCAGAACACCATAGCCTCCACACCACGACCAACGAGACCCTCTGCTTCAGTTGGAGCTTTGCCGCCTAGGGTTTATGTTGGTTACTCCATTTACAAAGGGAAGGCTGCGCTTACATTGACTCCTAGGCCCCCGGAATTCATGCCGCTCGATTCAGGAGCATACAAAATATCCAAGGAAGGTTATGTGCTGCTTCAGTTTGCACCGGCGGTTGGTACGCGCCAATATGATTGGAATAGGAAGCAGGTGTTTTCCTTATCAGTGAGTGAAATGGGAAGTGTGATTAGCCTTGGTGCAAGGGACTCTTATGAACTTTTTCATGATCCTTTTAAGGGCAAAAGTGATGAAGGTAAAGTCAGAAAAATTTTGAAGGTGGAGCCTCTTCCAGATGGTTCTGGACACTTCTTTAACCTAAGTGTTCAAAACAACCTTGTGAATGTGGATGAAAGCATCTATATCCCTGTTACAAAAGCAGAGTTGGCAGTTTTGACCTCAACTTTCAATTTTATCATGCCATACCTTCTGGGTTGGCACACCTTTGCAAACTCCATAAAGCCAGAAGATAATGGAGTGAATAATGCCAACCCAAGATATGGAGGAGACTATGAATGGAACAGATAG

>Glyma08g40850.2   sequence type=CDS   gene model=Glyma08g40850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGAATTTGCAGTTACAGCTTCACTCTCCTCCACCATCATCCCTCTTATCATCTTCATCATCACCATCATCACTATACTCTTCTTCTTCTCTTAAGCTATTCCCAAACCACCCTTTTTCCACAAAGTCCCTTCCTTTCAACAATCATAAACATTTCTCCCTAAGATGCCGCCACACTGACCTCTTCGACCAGAACACCATAGCCTCCACACCACGACCAACGAGACCCTCTGCTTCAGTTGGAGCTTTGCCGCCTAGGGTTTATGTTGGTTACTCCATTTACAAAGGGAAGGCTGCGCTTACATTGACTCCTAGGCCCCCGGAATTCATGCCGCTCGATTCAGGAGCATACAAAATATCCAAGGAAGGTTATGTGCTGCTTCAGTTTGCACCGGCGGTTGGTACGCGCCAATATGATTGGAATAGGAAGCAGGTGTTTTCCTTATCAGTGAGTGAAATGGGAAGTGTGATTAGCCTTGGTGCAAGGGACTCTTATGAACTTTTTCATGATCCTTTTAAGGGCAAAAGGTGTTCAAAACAACCTTGTGAATGTGGATGA

>Glyma08g40850.3   sequence type=CDS   gene model=Glyma08g40850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGAATTTGCAGTTACAGCTTCACTCTCCTCCACCATCATCCCTCTTATCATCTTCATCATCACCATCATCACTATACTCTTCTTCTTCTCTTAAGCTATTCCCAAACCACCCTTTTTCCACAAAGTCCCTTCCTTTCAACAATCATAAACATTTCTCCCTAAGATGCCGCCACACTGACCTCTTCGACCAGAACACCATAGCCTCCACACCACGACCAACGAGACCCTCTGCTTCAGTTGGAGCTTTGCCGCCTAGGGTTTATGTTGGTTACTCCATTTACAAAGGGAAGGCTGCGCTTACATTGACTCCTAGGCCCCCGGAATTCATGCCGCTCGATTCAGGAGCATACAAAATATCCAAGGAAGGTTATGTGCTGCTTCAGTTTGCACCGGCGGTTGGTACGCGCCAATATGATTGGAATAGGAAGCAGGTGTTTTCCTTATCAGTGAGTGAAATGGGAAGTGTGATTAGCCTTGGTGCAAGGGACTCTTATGAACTTTTTCATGATCCTTTTAAGGGCAAAAGTGATGAAGGTAAAGTCAGAAAAATTTTGAAGGTGGAGCCTCTTCCAGATGGTTCTGGACACTTCTTTAACCTAATTCTAACTCTGTTATGGAATTTCCCAAGGTGTTCAAAACAACCTTGTGAATGTGGATGA

>Glyma08g40850.4   sequence type=CDS   gene model=Glyma08g40850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGAATTTGCAGTTACAGCTTCACTCTCCTCCACCATCATCCCTCTTATCATCTTCATCATCACCATCATCACTATACTCTTCTTCTTCTCTTAAGCTATTCCCAAACCACCCTTTTTCCACAAAGTCCCTTCCTTTCAACAATCATAAACATTTCTCCCTAAGATGCCGCCACACTGACCTCTTCGACCAGAACACCATAGCCTCCACACCACGACCAACGAGACCCTCTGCTTCAGTTGGAGCTTTGCCGCCTAGGGTTTATGTTGGTTACTCCATTTACAAAGGGAAGGCTGCGCTTACATTGACTCCTAGGCCCCCGGAATTCATGCCGCTCGATTCAGGAGCATACAAAATATCCAAGGAAGGTTATGTGCTGCTTCAGTTTGCACCGGCGGTTGGTACGCGCCAATATGATTGGAATAGGAAGCAGGTGTTTTCCTTATCAGTGAGTGAAATGGGAAGTGTGATTAGCCTTGGTGCAAGGGACTCTTATGAACTTTTTCATGATCCTTTTAAGGGCAAAAGTGATGAAGGTAAAGTCAGAAAAATTTTGAAGGTGGAGCCTCTTCCAGATGGTTCTGGACACTTCTTTAACCTAAGTGTTCAAAACAACCTTGTGAATGTGGATGAAAGCATCTATATCCCTGTTACAAAAGCAGAGTTGGCAGTTTTGACCTCAACTTTCAATGTATAA

Predicted protein sequences of Glyma08g40850

Limit To All Plant Sequences

>Glyma08g40850.1   sequence type=predicted peptide   gene model=Glyma08g40850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNLQLQLHSPPPSSLLSSSSSPSSLYSSSSLKLFPNHPFSTKSLPFNNHKHFSLRCRHTDLFDQNTIASTPRPTRPSASVGALPPRVYVGYSIYKGKAALTLTPRPPEFMPLDSGAYKISKEGYVLLQFAPAVGTRQYDWNRKQVFSLSVSEMGSVISLGARDSYELFHDPFKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNNLVNVDESIYIPVTKAELAVLTSTFNFIMPYLLGWHTFANSIKPEDNGVNNANPRYGGDYEWNR*

>Glyma08g40850.2   sequence type=predicted peptide   gene model=Glyma08g40850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNLQLQLHSPPPSSLLSSSSSPSSLYSSSSLKLFPNHPFSTKSLPFNNHKHFSLRCRHTDLFDQNTIASTPRPTRPSASVGALPPRVYVGYSIYKGKAALTLTPRPPEFMPLDSGAYKISKEGYVLLQFAPAVGTRQYDWNRKQVFSLSVSEMGSVISLGARDSYELFHDPFKGKRCSKQPCECG*

>Glyma08g40850.3   sequence type=predicted peptide   gene model=Glyma08g40850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNLQLQLHSPPPSSLLSSSSSPSSLYSSSSLKLFPNHPFSTKSLPFNNHKHFSLRCRHTDLFDQNTIASTPRPTRPSASVGALPPRVYVGYSIYKGKAALTLTPRPPEFMPLDSGAYKISKEGYVLLQFAPAVGTRQYDWNRKQVFSLSVSEMGSVISLGARDSYELFHDPFKGKSDEGKVRKILKVEPLPDGSGHFFNLILTLLWNFPRCSKQPCECG*

>Glyma08g40850.4   sequence type=predicted peptide   gene model=Glyma08g40850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNLQLQLHSPPPSSLLSSSSSPSSLYSSSSLKLFPNHPFSTKSLPFNNHKHFSLRCRHTDLFDQNTIASTPRPTRPSASVGALPPRVYVGYSIYKGKAALTLTPRPPEFMPLDSGAYKISKEGYVLLQFAPAVGTRQYDWNRKQVFSLSVSEMGSVISLGARDSYELFHDPFKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNNLVNVDESIYIPVTKAELAVLTSTFNV*

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