Glyma08g40840 - SoyBase

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Report for Sequence Feature Glyma08g40840

Feature Type:	gene_model
Chromosome:	Gm08
Start:	40697888
stop:	40703488
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g40840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G20220	AT	Annotation by Michelle Graham. TAIR10: zinc knuckle (CCHC-type) family protein \| chr5:6822208-6825771 FORWARD LENGTH=393	SoyBase	E_val: 2.00E-156	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
PTHR23002	Panther	ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN	JGI		ISS
PTHR23002:SF32	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_D7LZZ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc knuckle (CCHC-type) family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LZZ1_ARALL	SoyBase	E_val: 3.00E-158	ISS
UniRef100_I1KXQ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXQ7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g40840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g40840

Paralog	Evidence	Comments
Glyma18g16224	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g40840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g297100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g40840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g40840

Limit To All Plant Sequences

>Glyma08g40840.1   sequence type=CDS   gene model=Glyma08g40840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTCCAACCAGGTTCACGTGTTCCGCTCTCCATTTCGCGTTCTGAAATATCCACGCACGAAAACCCCACCCAACACGCGTCTCTTCCTTCTTCTGCTTCATGCCAACAACAACAACAACACAAACGCTGGCACATCACCAACCTTCCTCTGTTCATCACTCAGTGATGACTCCTTTTCCACCCCAAAACCAAACCAGTTGGGTTACAATCCTTCAGAGGAACTGTTTGGTCTGGAGGAACTCAAGCCAAGCACGGCTAATTCTCATACACCAGAACCAAGGTCCTGGTTTGGTCCAAATGGACAGTATATCAGAGAGCTACCTTGTCCAAGTTGCCGGGGAAGGGGTTATACCCCTTGTACAGGTACAGAGTGTGGAATAGAAAGATCAAGGCCAGACTGTCCAAAATGTTATGGAAAGGGTATACTGACTTGCCACCAGTGCTCTGGAGATCGTGTTATATGGGAGGAATCAATTGATGAACAACCATGGGAGAGGGCCCGTTCTATCTCCCCACTTAAAGTGAAGGAAGATGATGAAGTTGACAAATTAGACATAAAGCTAGATGTGAAGAAAAAATCCAAGCGTGTTTACCAGTCTCCACCTCCAGAAGTTGGATTAAAGATCAGTCGTTCATTAAAAAGTCTCAATGCCAAAACTGGTCTATTTAGCAACAGAATGAAGATTATCCACCAGGATCCCAAGCTTCAGGCACAGCGTGTGGCTGCTATCAAGAAAGCCAAGGGAACTGTTGCAGCAAGAAAGCATACTTCCAAAATTATGAAAGCTTACTTTAGTGATCCAGTAAACCGTCAGAAAAGGAGCATGGCCATGAAGGGTGTGAAATTCTACTGCCAAAACTGTGGACGTGAAGGGCATAGGAGACACTACTGTCCAGAACTCAATGATAGCTTGGTTGATCGGCGATTCACGTGTAGGCTCTGCGGGGGGAAAGGCCACAACAGAAGAACATGTAGAAAGTTAAAGATAAGCCTTAGCAATGGAAGAACAATAAAACACCATCAGTGCAAAATATGTCACCAATTCGGCCATAACCGCAGGACCTGCCCTCAAGCTGTTCCTTTTGCTGTTCCTAGTAAAAGAAGGAACGCGGCCTCTCGAAGACCATACAAATGTAGGTTGTGTAAGAAGGAGGGGCATAATATTAGGACATGTCCAAGTAGGACAGTTGTTACTGAGAATCCTCAAGATTAA

Predicted protein sequences of Glyma08g40840

Limit To All Plant Sequences

>Glyma08g40840.1   sequence type=predicted peptide   gene model=Glyma08g40840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSNQVHVFRSPFRVLKYPRTKTPPNTRLFLLLLHANNNNNTNAGTSPTFLCSSLSDDSFSTPKPNQLGYNPSEELFGLEELKPSTANSHTPEPRSWFGPNGQYIRELPCPSCRGRGYTPCTGTECGIERSRPDCPKCYGKGILTCHQCSGDRVIWEESIDEQPWERARSISPLKVKEDDEVDKLDIKLDVKKKSKRVYQSPPPEVGLKISRSLKSLNAKTGLFSNRMKIIHQDPKLQAQRVAAIKKAKGTVAARKHTSKIMKAYFSDPVNRQKRSMAMKGVKFYCQNCGREGHRRHYCPELNDSLVDRRFTCRLCGGKGHNRRTCRKLKISLSNGRTIKHHQCKICHQFGHNRRTCPQAVPFAVPSKRRNAASRRPYKCRLCKKEGHNIRTCPSRTVVTENPQD*

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