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Report for Sequence Feature Glyma08g40831

Feature Type:gene_model
Chromosome:Gm08
Start:40690605
stop:40693434
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g40831
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G54320AT Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein | chr3:20114809-20118473 FORWARD LENGTH=430 SoyBaseE_val: 1.00E-89ISS
GO:0006109GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of carbohydrate metabolic process SoyBaseN/AISS
GO:0006110GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of glycolysis SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0008610GO-bp Annotation by Michelle Graham. GO Biological Process: lipid biosynthetic process SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0019432GO-bp Annotation by Michelle Graham. GO Biological Process: triglyceride biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR11795Panther PROTEIN KINASE JGI ISS
PTHR11795:SF332Panther JGI ISS
PF00847PFAM AP2 domain JGI ISS
UniRef100_B9HV97UniRef Annotation by Michelle Graham. Most informative UniRef hit: AP2 domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9HV97_POPTR SoyBaseE_val: 6.00E-150ISS
UniRef100_UPI000233E15EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E15E related cluster n=1 Tax=unknown RepID=UPI000233E15E SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g40831
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g40831 not represented in the dataset
Glyma08g40831 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g40831
ParalogEvidenceComments
Glyma18g16236 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g40831 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g297000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g40831
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g40831
>Glyma08g40831.1   sequence type=CDS   gene model=Glyma08g40831   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCTTGCACCTGTGAAGTCTGAACTAAGTCCAAGGAGCCATAGGTTGCTCATGATAGATGGTAGTGAGGTTATTGGCACTAAGTGTGTCAAAAGGCGGCGAAGAGATTCATCTACGGCCGTGTTAGGTGGCAATGGACAACAAGGTGAACAGTTAGAAGAACAGAAGCAACTTGGTGGCCAATCAACTGCCACCACTGTGAAGAGAAGCTCAAGGTTCAGGGGTGTTAGCAGACACAGGTGGACTGGAAGGTTTGAAGCACATCTATGGGATAAAGGGACCTGGAATCCCACTCAGAAGAAGAAAGGAAAGCAAGTATATTTGGGAGCTTATAATGATGAAGAAGCTGCAGCTAGAGCTTATGATTTGGCTGCACTCAAGTACTGGGGAATATCAACTTTCACAAATTTTCCTGTATCTGATTATGAGAAAGAAATTGAGATAATGAAAACTGTAACCAAAGAAGAATATCTTGCTTCATTGAGAAGGAGGAGCAGTGGTTTTTCCAGAGGTGTATCGAAGTATAGAGGAGTAGCAAGGCATCATCACAATGGAAGATGGGAAGCAAGGATTGGGAGAGTGTTCGGTAACAAGTACCTCTACCTTGGGACTTACAGTACACAAGAAGAAGCAGCTCGCGCATATGACATTGCAGCAATTGAATACAGAGGCATAAATGCAGTGACAAACTTTGACTTGAGCACCTACATAAGATGGCTAAGACCGGGAACACATCCTACTGCTTCTCATGATCAAAAGCCTAGCACTGATGCTCAACCTTTTGCAACCTCTAACTCCATGCAAGCAAGAGGGAACATTGAGGTATCCAACTCCAACAAGAATTCATTCCCCTCAGGTAAATTGGACAGTACCAAGAAGCGAGACTTTTCCAAGTACATGAACCCTTTGAGTCCATGCAACAAGCCATCTTCCCCAACAGCATTAGGACTTCTCCTAAAATCCTCAGTGTTTAGAGAACTGATGCAGAGAAATCTGAACTCTTCTAGTGAAGAAGCTGAAGAAGTTGAATTGAAATATCCACATGAGGGCAATGATGGAGTTGGAGGGATTTATGATAATGAAAACACCAATAACTCTTACTTTTGCTCTTCTAATATCAGCAGATTACCTAACTTGGAGTCATCAGAAGAGAGTCCATTGCCTATGTATCATGGAACTGTGCAATCACTATGGAATAGTGCTTTCAACATGTCTAACTGA
Predicted protein sequences of Glyma08g40831
>Glyma08g40831.1   sequence type=predicted peptide   gene model=Glyma08g40831   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELAPVKSELSPRSHRLLMIDGSEVIGTKCVKRRRRDSSTAVLGGNGQQGEQLEEQKQLGGQSTATTVKRSSRFRGVSRHRWTGRFEAHLWDKGTWNPTQKKKGKQVYLGAYNDEEAAARAYDLAALKYWGISTFTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGTHPTASHDQKPSTDAQPFATSNSMQARGNIEVSNSNKNSFPSGKLDSTKKRDFSKYMNPLSPCNKPSSPTALGLLLKSSVFRELMQRNLNSSSEEAEEVELKYPHEGNDGVGGIYDNENTNNSYFCSSNISRLPNLESSEESPLPMYHGTVQSLWNSAFNMSN*






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