Glyma08g40810 - SoyBase

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Report for Sequence Feature Glyma08g40810

Feature Type:	gene_model
Chromosome:	Gm08
Start:	40649810
stop:	40659682
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g40810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G69830	AT	Annotation by Michelle Graham. TAIR10: alpha-amylase-like 3 \| chr1:26288518-26293003 REVERSE LENGTH=887	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005982	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch metabolic process	SoyBase	N/A	ISS
GO:0005983	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch catabolic process	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004556	GO-mf	Annotation by Michelle Graham. GO Molecular Function: alpha-amylase activity	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
KOG0471	KOG	Alpha-amylase	JGI		ISS
PTHR10357	Panther	AMYLASE	JGI		ISS
PTHR10357:SF9	Panther	ALPHA-XYLOSIDASE-RELATED	JGI		ISS
PF00128	PFAM	Alpha amylase, catalytic domain	JGI		ISS
PF07821	PFAM	Alpha-amylase C-terminal beta-sheet domain	JGI		ISS
UniRef100_B9S2B5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alpha-amylase, putative n=1 Tax=Ricinus communis RepID=B9S2B5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338875	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338875 related cluster n=1 Tax=unknown RepID=UPI0002338875	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g40810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g40810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g296800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g40810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g40810

Limit To All Plant Sequences

>Glyma08g40810.1   sequence type=CDS   gene model=Glyma08g40810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTATCTCCACCACTACCACCACCCCTCTCTTCTGCTTCAACCACTACTTCACAAGAGAAAGAGAACTTTCCATTCACCGTTCCAGGCCAAAGCCATTCTCTCTCACTTCCGCTTCCACTCTCACCCTCTTCAACTCCAACAACAACAATAACTGTAACTATAGCTTTGCCTCTTGCAAACCACACAAGTTTCACACTCCAAAGTTTGAAGCTTTTGCCACAAACACGGATACCCTCGAGTCAATTCAGTCCTCTGATGTCTCGTTCGATCAGACTTTCCCCATCAACCGAACTGAACTGGTGGAGGGAAAGATCTTTGTAAGATTGGATCAGGGGAAGGATTTGGGAAATTGGGAGCTTACAGTGGGTTGCAATCTACCAGGGAAATGGATTCTTCACTGGGGAGTTTCCCGTGTGGATGATGTTGGAAGTGAATGGGATCAACCTCCTCGCGATATGATACCCCCTGGATCTATTCCTATTAAGGACTATGCAATAGAGACACCTATGAAGAAATCATTGTCATCTGCTGAAGGAGATATTTTACATGAAGTCAAGATTGATCTTAAACCCAACAATGATATTTCAGCTATTAATTTTGTTCTCAAGGATGAGGAAACCGGTGCTTGGTACCAACACAAAGGAAGAGATTTCAAGGTTCCTCTGGTCAACTACCTTAAAGAGGATGCTAATATAATTGGACCTAAAAAGGGTTTTAGTTTGTGGCCAGGGGCCTTGGGGCAGATATCTAACATTCTCCTCAAGTCAGAAGCAACACATGACAAAGATCAAGATGACAACAGTGGATCCATAAATACAAAAGTGGAAAATAGTCAACTGGAAGGTTTCTATGTAGACCTATCAATTACCAAGGAAGTTATTGTCGAAAACTCTATCAGTGTCTCCATTAGGAAGTGCTCTGAGACAGCTAAGAATATTTTATATTTAGAAACAGATATACCTGGAGATATTCTCCTTCACTGGGGTGTTTGTAGGGATGATTTGAAGTGGTGGGAAATTCCACCTGCTCCTCATCCACCAGAAACAATAGCATTTAAGGACAGAGCTTTAAGAACTAAATTACAGTCAAGAGACAGTGGAGAGGGAAGTTCAGTACAACTCTCTTTGGGAGAAGAATTTTCTGGATTTCTTTTTGTTCTTAAGCTAAATGACAGTACTTGGATAAATGACATGGGAGATGACTTTTATATCCCTCTCCCAAGTTCTGGAAGCATAATTACTGGCAACAGAGAAGATCAATCAGAAGGTGTGCAGAAGGAAGTGACTGAAGAGGCAGGTCAAGAGGAATCTATATCTGCATTTACTGATGAAATAATCAACGAAATAAGGCATTTGGTGACAGACATTTCCTCTGAGAAGAATCGAAAGACAAAATCCAAAGAAGCACAAGAAAGCATTCTTCAAGAAATTGAAAAACTAGCTGCTGAAGCTTATAGTATCTTCAGAAGCTCAGTTCCAAGTTTCTCAGAGGAAACTATTGCGGAATCTGAGGCTGCTGTGGAATCTAAGACACTATTATTGCCTGACTTGCCTCCACAAATTTCCTCGGGAACAGGCACAGGGTACGAAATTGTATGCCAAGGGTTTAATTGGGAATCTCATAAATCTGGAAGATGGTATATGGAGCTTAAAGAGAAAGCTGCAGAACTGGCATCATTTGGCTTTACTGTGATATGGTTACCACCACCTACAGAGTCTGTTTCACCTGAAGGATATATGCCAAAGGATTTATATAATTTAAATTCTAGATATGGAACTATTGATGAACTGAAGGATGTGGTGAAAACTTTGCATGAAGTTGGAATCAAAGTGCTTGGAGATGCTGTTTTAAATCACCGCTGTGCTCACTTCAAGAACCAGAGTGGTATTTGGAACTTATTTGGAGGTCGTCTCAACTGGGATGATCGTGCAATTGTAGCTGATGATCCACATTTTCAGGGGAGAGGCAACAAGAGTAGTGGAGACAATTTTCATGCTGCTCCAAACATTGATCATTCACAGGACTTTGTGAGAAAGGATCTTAAAGAATGGTTATGCTGGATGAGGGAAGAAATTGGGTATGATGGGTGGAGGCTTGACTTTGTCAGGGGATTTTGGGGTGGCTATGTAAAGGACTACCTGGAAGCAAGTGAACCTTACTTTGCGGTAGGAGAGTACTGGGATTCCCTTAGTTATACATATGGTGAAATGGATCATAATCAAGATGCACATAGGCAGAGGATCGTTGACTGGATCAATGCTACTGCTGGTACTGCTGGTGCATTTGATGTTACAACCAAAGGGATTCTTCACTCTGCTTTGGAAAGATGTGAATATTGGCGCTTGTCAGATCAGAAGGGGAAACCCCCCGGTGTTCTTGGATGGTGGCCGTCTCGTGCTGTTACTTTTATAGAAAATCATGACACTGGCTCTACCCAGGGTCATTGGAGATTTCCCAGTGGAAAAGAAATGCAGGGATATGCCTACACTCTTACTCACCCAGGAACACCATCAGTGTTCTATGACCATATTTTTTCTCACTATAAAACTGAAATAGCAACACTTATCTCTATCAGGAAGCGGAACAAGATCCACTGCAGGAGTACACTTAAAATTTGCAAGGCAGAAAGGGATGTTTATGCAGCTATCGTTGATGACAAAGTTGCTATGAAAATTGGACCTGGTCATTTTGAACCACCTAGTGGATCTCAAAGATGGTCCTCAGCTTTGGAGGGAAGGGACTATAAGATTTGGGAGGCATCATAA

Predicted protein sequences of Glyma08g40810

Limit To All Plant Sequences

>Glyma08g40810.1   sequence type=predicted peptide   gene model=Glyma08g40810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSISTTTTTPLFCFNHYFTRERELSIHRSRPKPFSLTSASTLTLFNSNNNNNCNYSFASCKPHKFHTPKFEAFATNTDTLESIQSSDVSFDQTFPINRTELVEGKIFVRLDQGKDLGNWELTVGCNLPGKWILHWGVSRVDDVGSEWDQPPRDMIPPGSIPIKDYAIETPMKKSLSSAEGDILHEVKIDLKPNNDISAINFVLKDEETGAWYQHKGRDFKVPLVNYLKEDANIIGPKKGFSLWPGALGQISNILLKSEATHDKDQDDNSGSINTKVENSQLEGFYVDLSITKEVIVENSISVSIRKCSETAKNILYLETDIPGDILLHWGVCRDDLKWWEIPPAPHPPETIAFKDRALRTKLQSRDSGEGSSVQLSLGEEFSGFLFVLKLNDSTWINDMGDDFYIPLPSSGSIITGNREDQSEGVQKEVTEEAGQEESISAFTDEIINEIRHLVTDISSEKNRKTKSKEAQESILQEIEKLAAEAYSIFRSSVPSFSEETIAESEAAVESKTLLLPDLPPQISSGTGTGYEIVCQGFNWESHKSGRWYMELKEKAAELASFGFTVIWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDVVKTLHEVGIKVLGDAVLNHRCAHFKNQSGIWNLFGGRLNWDDRAIVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMREEIGYDGWRLDFVRGFWGGYVKDYLEASEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIVDWINATAGTAGAFDVTTKGILHSALERCEYWRLSDQKGKPPGVLGWWPSRAVTFIENHDTGSTQGHWRFPSGKEMQGYAYTLTHPGTPSVFYDHIFSHYKTEIATLISIRKRNKIHCRSTLKICKAERDVYAAIVDDKVAMKIGPGHFEPPSGSQRWSSALEGRDYKIWEAS*

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