SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G26665 | AT | Annotation by Michelle Graham. TAIR10: Mediator complex, subunit Med10 | chr1:9214510-9215426 FORWARD LENGTH=189 | SoyBase | E_val: 4.00E-89 | ISS |
| GO:0006357 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016592 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mediator complex | SoyBase | N/A | ISS |
| KOG3046 | KOG | Transcription factor, subunit of SRB subcomplex of RNA polymerase II | JGI | ISS | |
| PTHR13345 | Panther | NUT2 AND UXT | JGI | ISS | |
| PTHR13345:SF2 | Panther | gb def: negative regulator of urs2 of the ho promoter, nut2p [saccharomyces cerevisiae] | JGI | ISS | |
| PF09748 | PFAM | Transcription factor subunit Med10 of Mediator complex | JGI | ISS | |
| UniRef100_G7LHY0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mediator of RNA polymerase II transcription subunit n=2 Tax=Medicago truncatula RepID=G7LHY0_MEDTR | SoyBase | E_val: 7.00E-98 | ISS |
| UniRef100_I1KXQ2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KXQ2_SOYBN | SoyBase | E_val: 8.00E-138 | ISS |
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Glyma08g40780 not represented in the dataset |
Glyma08g40780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g16280 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g296500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g40780.1 sequence type=CDS gene model=Glyma08g40780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTCATCACAAAGTGCAGCTCTTGGGGGAAATGGTGGGAGTGGTGGAAATGGGACGTTGATTTCTCAAAATAATGACATGGCAGCCTCTGCAACAGGAGCTGATGATTCTATGCAGAAGCTGAACCAGGTCAGCAATTCCATTCAGAAAACCTTAGGCCTTATCCATCAGCTTTACCTCACAGTTTCTACCTTCAATGCTGCCTTTCAAATGCCTCTCCTCCAACGCATCAATGGCCTTGTTGCGGAGCTTGACAACATGGTTAAATTGGCAGAGAAGTGCAACATTCAGGTTCCTATGGAGGTTGTCAATTTAATTGATGATGGAAAGAATCCAGACGAGTTTACCAAAGATGTTATAAATAGCTGTATTGTAAAGAATCAGATCACCAAAGGAAAAACTGATGCTTTAAAGAGTTTGCGCAAACATCTTTTGGAGGAATTGGAGCATAACTTCCCTGATGAGGTTGAAACTTTTAGAGAGAGTCGTGCTGCTGCAGCTGCTGAGTTGAAACGTCAGGCACAGGCACAAAGCGCACTGCCAAATGGAGATGTAAGGGTTAAATCAGAGCATTGA
>Glyma08g40780.1 sequence type=predicted peptide gene model=Glyma08g40780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSSQSAALGGNGGSGGNGTLISQNNDMAASATGADDSMQKLNQVSNSIQKTLGLIHQLYLTVSTFNAAFQMPLLQRINGLVAELDNMVKLAEKCNIQVPMEVVNLIDDGKNPDEFTKDVINSCIVKNQITKGKTDALKSLRKHLLEELEHNFPDEVETFRESRAAAAAELKRQAQAQSALPNGDVRVKSEH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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