Report for Sequence Feature Glyma08g40670
Feature Type: gene_model
Chromosome: Gm08
Start: 40407726
stop: 40410492
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g40670
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G59725 AT
Annotation by Michelle Graham. TAIR10: DNAJ heat shock family protein | chr1:21950738-21952210 FORWARD LENGTH=331
SoyBase E_val: 2.00E-108 ISS
GO:0006457 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein folding
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0031072 GO-mf
Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding
SoyBase N/A ISS
GO:0051082 GO-mf
Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding
SoyBase N/A ISS
KOG0712
KOG
Molecular chaperone (DnaJ superfamily)
JGI ISS
PTHR24077 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24077:SF88 Panther
JGI ISS
PF00226 PFAM
DnaJ domain
JGI ISS
PF01556 PFAM
DnaJ C terminal region
JGI ISS
UniRef100_B9S2E0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Curved DNA-binding protein, putative n=1 Tax=Ricinus communis RepID=B9S2E0_RICCO
SoyBase E_val: 9.00E-118 ISS
UniRef100_I1KXP3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXP3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g40670
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g40670
Paralog Evidence Comments
Glyma18g16720 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g40670 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g295500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g40670
Coding sequences of Glyma08g40670
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g40670.1 sequence type=CDS gene model=Glyma08g40670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTGCTGGTGAGTACTACAAGATCCTCAAGGTGAACCGCAATGCCACAGATGAAGAACTCAAGAGGGCATATAAGAGATTGGCCATGAAGTGGCACCCAGATAAGAACCATCAACACCACCATGTTACGAAGGAAGAAGCTGAGGCAAAGTTCAAGCAGGTTTCGGAGGCTTATGATGTTCTCAGCGACCCAAAGAAGCGTCAGATCTATGATTTCTATGGCCACTATCCCCTCAACTCCATGAAGGTGAATGAGGAGAATAGTGATGGGGATGTTAATAGGGTCCCCAAGGGGAAGGGGGAGAAAAATGTGGGGGTGGTTGAGAGCAAATTGGTGTGCACCCTTGAGGAGCTTTACAAAGGGTGCAAGAAGAAGTTGAAGATCTCAAGGACTGTTCCTCATGAATTCGGGAAAATGAAGACTGTGGAAGAGGTCTTGAAAATTGACATCAAACCTGGTTGGAAAAGAGGCACAAAAATAACATTTCCTGGAAAAGGCAACCAAGAAGCAGAAAGTAAAACTCCGGATGACCTAATCTTTGTGGTGGATGAAAAACCACATGCTTTTTTCAAAAGGGATGGAAATGATTTGGTTGTCACACAGAAAATCTTACTTGTGGAGGCTCTAGTGGGAAAGACACTCAACTTAACCACCTTGGATGGAAGAGAGCTCACAATTCAAGTCACAGAAGTAGTGAAACCAAAATATGTGCTGGTGGTCCCAAATGAAGGAATGCCAATTTCAAAGGAACCTGGCAAGAAAGGAAACTTGAGAATCAAGTTTGATGTTTTGTTCCCATCAAGGCTTACCTCACAACAGAAGTATGAGCTGAAAAGGATTTTGAGCAACAGTACTGCTGATGACTAA
Predicted protein sequences of Glyma08g40670
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g40670.1 sequence type=predicted peptide gene model=Glyma08g40670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGAGEYYKILKVNRNATDEELKRAYKRLAMKWHPDKNHQHHHVTKEEAEAKFKQVSEAYDVLSDPKKRQIYDFYGHYPLNSMKVNEENSDGDVNRVPKGKGEKNVGVVESKLVCTLEELYKGCKKKLKISRTVPHEFGKMKTVEEVLKIDIKPGWKRGTKITFPGKGNQEAESKTPDDLIFVVDEKPHAFFKRDGNDLVVTQKILLVEALVGKTLNLTTLDGRELTIQVTEVVKPKYVLVVPNEGMPISKEPGKKGNLRIKFDVLFPSRLTSQQKYELKRILSNSTADD*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
