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Report for Sequence Feature Glyma08g40600

Feature Type:gene_model
Chromosome:Gm08
Start:40345483
stop:40346776
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g40600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G59700AT Annotation by Michelle Graham. TAIR10: glutathione S-transferase TAU 16 | chr1:21936459-21937763 FORWARD LENGTH=234 SoyBaseE_val: 4.00E-23ISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004364GO-mf Annotation by Michelle Graham. GO Molecular Function: glutathione transferase activity SoyBaseN/AISS
KOG0406 KOG Glutathione S-transferase JGI ISS
PTHR11260Panther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING JGI ISS
PTHR11260:SF16Panther GLUTATHIONE S-TRANSFERASE THETA JGI ISS
UniRef100_G7LDS9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glutathione S-transferase n=1 Tax=Medicago truncatula RepID=G7LDS9_MEDTR SoyBaseE_val: 2.00E-48ISS
UniRef100_I1KXN7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KXN7_SOYBN SoyBaseE_val: 6.00E-88ISS

Expression Patterns of Glyma08g40600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g40600 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g294600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g40600
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g40600
>Glyma08g40600.1   sequence type=CDS   gene model=Glyma08g40600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAGAGTGATGAGTTGAAGCTAATGGGTAAATGGTCGAGTCCTTATGCGATGAGGGTGAAGATTGCCCTCAACATCAAATCCCTTGAACATGAACACTTTGAAGAAACCATGATAAGTTTTAGACTTTTAGTCTATATAAGAAAACATCAATGGTTTCCTTCCATGAAAAGCATTATAATTGTTGAAGGAGAGGAAGAAAGGAAGCCATACTTTGAGGTGTTGGAAGAAGTGCTTGAGAGGATAGAGGATGCTTTTATGAAATGCAGCAAAGGAAAGCCCTTTTTTGAGCAAAGGTATGAGAGGAAACTTCTGGTTGAAGCAAAGGCTCCTGCTTTGGTGAAATGGGCTGAGAGATTTGTTGTTGACCCTACTGTGAAGGGGCTTATACCTGAGACTGATAAGCTTGTTGAGATTTCCAAGTCTCTTCAGATCAAATGA
Predicted protein sequences of Glyma08g40600
>Glyma08g40600.1   sequence type=predicted peptide   gene model=Glyma08g40600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKSDELKLMGKWSSPYAMRVKIALNIKSLEHEHFEETMISFRLLVYIRKHQWFPSMKSIIIVEGEEERKPYFEVLEEVLERIEDAFMKCSKGKPFFEQRYERKLLVEAKAPALVKWAERFVVDPTVKGLIPETDKLVEISKSLQIK*






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