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Report for Sequence Feature Glyma08g40490

Feature Type:gene_model
Chromosome:Gm08
Start:40219820
stop:40225540
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g40490
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G10430AT Annotation by Michelle Graham. TAIR10: protein phosphatase 2A-2 | chr1:3428705-3430437 REVERSE LENGTH=306 SoyBaseE_val: 0ISS
GO:0006470GO-bp Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation SoyBaseN/AISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0009903GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast avoidance movement SoyBaseN/AISS
GO:0034613GO-bp Annotation by Michelle Graham. GO Biological Process: cellular protein localization SoyBaseN/AISS
GO:0005623GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004722GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
KOG0371 KOG Serine/threonine protein phosphatase 2A, catalytic subunit JGI ISS
PTHR11668Panther SERINE/THREONINE PROTEIN PHOSPHATASE JGI ISS
PTHR11668:SF21Panther CALCINEURIN 1A JGI ISS
PF00149PFAM Calcineurin-like phosphoesterase JGI ISS
UniRef100_I1KXM8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine-protein phosphatase n=1 Tax=Glycine max RepID=I1KXM8_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1KXM8UniRef Annotation by Michelle Graham. Best UniRef hit: Serine/threonine-protein phosphatase n=1 Tax=Glycine max RepID=I1KXM8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g40490
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g40490 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g293400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g40490
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g40490
>Glyma08g40490.1   sequence type=CDS   gene model=Glyma08g40490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGTCTCACGCGGATCTGGAACGACAGATCGAGCAGCTGATGGAGTGCAAGCCTCTGTCGGAGTCGGAGGTGAAGGCGCTGTGTGATCAAGCGAGGGCGATTCTCGTGGAGGAATGGAACGTGCAACCGGTGAAGTGCCCCGTCACCGTCTGCGGCGATATTCACGGCCAGTTTTACGATCTCATCGAGCTGTTTCGGATTGGAGGGAACGCACCCGATACCAATTATCTCTTCATGGGTGATTATGTAGATCGTGGATACTATTCAGTGGAGACTGTTACACTTTTGGTGGCTTTGAAAGTCCGTTACAGAGATAGAATCACAATTCTCAGGGGAAATCATGAAAGTCGTCAAATTACTCAAGTGTATGGCTTCTATGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATACTTTACAGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGATTTTCTGCTTGCATGGAGGTCTCTCACCTTCTTTGGATACACTGGATAACATCAGAGCATTGGATCGTATACAAGAGGTTCCACATGAAGGACCAATGTGTGATCTCTTGTGGTCTGACCCTGATGATCGCTGTGGATGGGGAATATCTCCACGTGGTGCAGGATACACATTTGGACAGGATATAGCTGCTCAGTTTAATCATACCAATGGTCTCTCCCTGATATCGAGAGCTCATCAGCTTGTTATGGAAGGATTCAATTGGTGCCAGGACAAAAATGTGGTGACTGTATTTAGTGCACCAAATTACTGTTACCGATGTGGGAATATGGCTGCTATACTAGAAATAGGAGAGAATATGGATCAGAATTTCCTTCAGTTTGATCCAGCGCCCAGGCAAATTGAGCCTGACACCACACGCAAGACTCCAGATTATTTTTTATAA
Predicted protein sequences of Glyma08g40490
>Glyma08g40490.1   sequence type=predicted peptide   gene model=Glyma08g40490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSHADLERQIEQLMECKPLSESEVKALCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTNGLSLISRAHQLVMEGFNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL*






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